NOTICE: This version of the NSF Unidata web site (archive.unidata.ucar.edu) is no longer being updated.
Current content can be found at unidata.ucar.edu.
To learn about what's going on, see About the Archive Site.
NOTICE: This version of the NSF Unidata web site (archive.unidata.ucar.edu) is no longer being updated.
Current content can be found at unidata.ucar.edu.
To learn about what's going on, see About the Archive Site.
NOTE: The netcdf-hdf mailing list is no longer active. The list archives are made available for historical reasons.
On Sep 12, 2007, at 2:52 PM, Elena Pourmal wrote:
yes, HDF5 doesn't have H5Pget_fapl_mpipo. Probably a typo.
This should probably be "H5Pget_fapl_mpio" instead.
Quincey
At 2:46 PM -0500 9/12/07, Robert Latham wrote:On Wed, Sep 12, 2007 at 01:20:13PM -0600, Ed Hartnett wrote:You must use the --enable-parallel option to configure.Hi Ed, this didn't seem to make any difference. config.h has this alarming section: /* if true, parallel netCDF-4 is in use */ #define USE_PARALLEL 1 /* if true, compile in parallel netCDF-4 based on MPI/IO */ /* #undef USE_PARALLEL_MPIO */ /* if true, compile in parallel netCDF-4 based on MPI/POSIX */ #define USE_PARALLEL_POSIX 1 When I take a closer look at config.log, the check for MPI-IO (POSIX) succedds but the check for "real" MPI-IO fails: configure:29033: checking for H5Pget_fapl_mpiposix in -lhdf5 configure:29068: /home/robl/work/soft/hdf5-1.8.0-beta3/bin/h5pcc -o conftest -g -O2 -I/home/robl/work/soft/hdf5-1.8.0-beta3/include -L/home/robl/work/soft/hdf5-1.8.0-beta3/lib conftest.c -lhdf5 -lhdf5_hl -lhdf5 -lm -lz -lhdf5 >&5 configure:29074: $? = 0 configure:29092: result: yes configure:29107: checking for H5Pget_fapl_mpipo in -lhdf5 configure:29142: /home/robl/work/soft/hdf5-1.8.0-beta3/bin/h5pcc -o conftest -g -O2 -I/home/robl/work/soft/hdf5-1.8.0-beta3/include -L/home/robl/work/soft/hdf5-1.8.0-beta3/lib conftest.c -lhdf5 -lhdf5_hl -lhdf5 -lm -lz -lhdf5 >&5 conftest.o: In function `main': /home/robl/work/netcdf-4.0-beta1/build/conftest.c:67: undefined reference to `H5Pget_fapl_mpipo' collect2: ld returned 1 exit status On Wed, Sep 12, 2007 at 02:31:23PM -0500, Elena Pourmal wrote:Did HDF5 tests pass? There should be no difference between building NetCDF-4 and HDF5 tests.....I can build the HDF5 tests no problem, but the HDF5 tests aren't trying to use the symbol "H5Pget_fapl_mpipo". Instead, they use "H5Pget_fapl_mpiposix"Also you may try to remove -O2 flag. The error you are getting, doesn't make any sense (at least to me :-) )The preprocessor suggests that something somewhere is defining MPI_Comm and MPI_Info to be ints before including mpi.h Thanks for all the help. I bet we're pretty close! ==rob -- Rob Latham Mathematics and Computer Science Division A215 0178 EA2D B059 8CDF Argonne National Lab, IL USA B29D F333 664A 4280 315B-------------------------------------------------------------- Elena Pourmal The HDF Group 1901 So First ST. Suite C-2 Champaign, IL 61820 epourmal@xxxxxxxxxxxx (217)333-0238 (office) (217)333-9049 (fax) ------------------------------------------------------------ _______________________________________________ netcdf-hdf mailing list netcdf-hdf@xxxxxxxxxxxxxxxxFor list information or to unsubscribe, visit: http:// www.unidata.ucar.edu/mailing_lists/
Attachment:
smime.p7s
Description: S/MIME cryptographic signature
netcdf-hdf archives: