winthan <keshunli@xxxxxxxxx> writes:
> I used the following to configure the netcdf and hdf.�
> ./configure
> --prefix=/usr/rmt_share/scratch95/w/wwinthan/pnetcdf/installnetcdf
> --enable-netcdf-4
> --with-hdf5=/apps/rhel5/graphics/x86_64/intel/11.1.038/hdf5-1.8.3p/
> --with-szlib=/apps/rhel5/graphics/x86_64/intel/11.1.038/hdf5-1.8.3p/
> --disable-f90
> i have previously installed hdf5 with parallel mode and also with szlib.
> i attached the config.log. can you tell me what i'm missing?
> if needed,i can also install the hdf5 and szlib again. can you help me
> with how to configure ?
> after i make all,i get the following error
> make �all-recursive
> make[1]: Entering directory
> `/usr/rmt_share/scratch95/w/wwinthan/pnetcdf/netcdf-4.0.1'
> Making all in fortran
> make[2]: Entering directory
> `/usr/rmt_share/scratch95/w/wwinthan/pnetcdf/netcdf-4.0.1/fortran'
> make �all-am
> make[3]: Entering directory
> `/usr/rmt_share/scratch95/w/wwinthan/pnetcdf/netcdf-4.0.1/fortran'
> depbase=`echo fort-attio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
> �� � � �/bin/sh ../libtool --tag=CC � --mode=compile mpicc
> -DHAVE_CONFIG_H
> -I. -I.. � -I../libsrc4
> -I/apps/rhel5/graphics/x86_64/intel/11.1.038/hdf5-1.8.3p//include � � -g
> -O2 -MT fort-attio.lo -MD -MP -MF $depbase.Tpo -c -o fort-attio.lo
> fort-attio.c &&\
> �� � � �mv -f $depbase.Tpo $depbase.Plo
> libtool: compile: �mpicc -DHAVE_CONFIG_H -I. -I.. -I../libsrc4
> -I/apps/rhel5/graphics/x86_64/intel/11.1.038/hdf5-1.8.3p//include -g -O2
> -MT fort-attio.lo -MD -MP -MF .deps/fort-attio.Tpo -c fort-attio.c -o
> fort-attio.o
> icc: command line warning #10120: overriding '-O3' with '-O2'
> cfortran.h(138): catastrophic error: #error directive: "cfortran.h: �Can't
> find your environment among: � �- MIPS cc and f77 2.0. (e.g. Silicon
> Graphics, DECstations, ...) � � � � - IBM AIX XL C and FORTRAN
> Compiler/6000 Version 01.01.0000.0000 � � � � - VAX � VMS CC 3.1 and
> FORTRAN 5.4. � � � � � � � � � � � � � � � �
> � � �- Alpha VMS DEC C 1.3
Sorry, I couldn't quite read your output - too much gobbledy-goop. But
when building with parallel you need to set the CPPFLAGS=-DgFortran.
(If you are not using gfortran, you can also try -Df2cFortran or
-DpgiFortran. One of these three works for almost any fortran compiler.)
Also note that all component parts (HDF5, zlib, and szlib, if you are
using it) must be built with the same C compiler command, usually
"mpicc". Also hdf5 requires the --enable-parallel option.
Good luck,
Ed
--
Ed Hartnett -- ed@xxxxxxxxxxxxxxxx
