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Hi Roy, Ed, Ian and Steve, Thanks for all support and good ideas. Problem solved !!! :^) g95 -O5 -o pom.exe pom2k.f areas_masks.o advave.o advq.o advt1.o advt2.o advct.o advu.o advv.o baropg.o bcond.o bcondorl.o box.o dens.o depth.o file2ic.o findpsi.o printall.o profq.o proft.o profu.o profv.o prxy.o prxyz.o prxz.o pryz.o seamount.o slpmax.o smol_adif.o vertvl.o def_var_netcdf.o handle_netcdf_error.o write_netcdf.o -L/sw/lib/netcdf-g95/lib -lnetcdff -lnetcdf Apparently I need to give the path to -L/sw/lib/netcdf-g95/lib and not /sw/lib/. It also only works if I use both -lnetcdff and -lnetcdf, as Roy just mentioned. Many thanks, Felipe On Jan 28, 2008 1:49 PM, Roy Mendelssohn <Roy.Mendelssohn@xxxxxxxx> wrote: > I think you have the netcdf that either doesn't do fortran or uses > f2c. If you want to use g95 or gfortran fink has separate libs as > follows: > > tcsh-% fink list netcdf > Information about 6701 packages read in 1 seconds. > i netcdf 3.6.2-6 Interface & > lib for array-based data access > netcdf-absoft 3.5.1-1014 Lib for array- > oriented data & interface to Absoft Fortran > netcdf-absoft-bin 3.5.1-1014 Lib for array- > oriented data & interface to Absoft Fortran > netcdf-absoft-shlibs 3.5.1-1014 Lib for array- > oriented data & interface to Absoft Fortran > i netcdf-bin 3.6.2-6 Interface & > lib for array-based data access > netcdf-g95 3.6.2-6 Interface & > lib for array-based data access > netcdf-g95-shlibs 3.6.2-6 Interface & > lib for array-based data access > i netcdf-gfortran 3.6.2-7 Interface & > lib for array-based data access > i netcdf-gfortran-shlibs 3.6.2-7 Interface & > lib for array-based data access > netcdf-perl-pm586 1.2.3-6 Perl extension > for netCDF datasets access > i netcdf-shlibs 3.6.2-6 Interface & > lib for array-based data access > > so if you want to use g95 first run > > fink install netcdf-g95 netcdf-g95-shlibs > > make sure you link in the resulting libs and then things should work > better. > > -Roy M. > > > > On Jan 28, 2008, at 10:38 AM, Felipe Pimenta wrote: > > > Hi Steve, > > > > The command: nm /sw/lib/libnetcdf.a | grep nf_def_var resulted in > > nothing (no expressions such as nf_def_var) . > > > > The result of "nm /sw/lib/libnetcdf.a > ~/Desktop/output.txt" it's > > included as attachment to this message. Here goes a sample. There is a > > _nc_def_var: > > > > U _nc_cktype > > 00000b00 T _nc_def_var > > U _nc_inq_natts > > 00000db0 T _nc_inq_var > > 00001060 T _nc_inq_vardimid > > 00000d40 T _nc_inq_varid > > > > Thanks, > > > > Felipe > > > > > > On Jan 28, 2008 1:00 PM, Steve Cousins <cousins@xxxxxxxxxxxxxx> wrote: > >> > >> On Mon, 28 Jan 2008, felipe@xxxxxxxx wrote: > >> > >>> Hi Steve, > >>> > >>> No, I don't have a /sw/lib/libnetcdff.a. This is what I have at / > >>> sw/lib : > >>> > >>> ls /sw/lib/libnet* > >>> /sw/lib/libnetcdf.3.dylib /sw/lib/libnetcdf.dylib > >>> /sw/lib/libnetcdf_c++.4.dylib /sw/lib/libnetcdf_c++.la > >>> /sw/lib/libnetcdf.4.dylib /sw/lib/libnetcdf.la > >>> /sw/lib/libnetcdf_c++.a > >>> /sw/lib/libnetcdf.a /sw/lib/libnetcdf_c++.3.dylib > >>> /sw/lib/libnetcdf_c++.dylib > >> > >> Hi Felipe, > >> > >> Ok. How about running: > >> > >> nm /sw/lib/libnetcdf.a | grep nf_def_var > >> > >> to see if the symbol is in there at all. Perhaps it wasn't > >> compiled with > >> the Fortran code? Or just do: > >> > >> nm /sw/lib/libnetcdf.a > >> > >> to see what _is_ in there and what the underscoring is like. > >> > >> Good luck, > >> > >> Steve > >> > >> > >> > >>> Thanks for your suggestion, > >>> > >>> Felipe > >>> > >>> > >>> > >>> On Jan 28, 2008 12:39 PM, Steve Cousins <cousins@xxxxxxxxxxxxxx> > >>> wrote: > >>>>> > >> > >>>>> Is there a /sw/lib/libnetcdff.a file (two f's at the end)? I've > >>>>> run into > >>>>> this where code that used to work now needs to add this library > >>>>> in to get > >>>>> the Fortran symbols. FWIW, I vote that this "feature" gets > >>>>> removed. It is > >>>>> a real pain. > >>>>> > >>>>> I hope this helps. > >>>>> > >>>>> Steve > >>>>> __________________________________________________________________ > >>>>> ____ > >>>>> Steve Cousins, Ocean Modeling Group Email: > >>>>> cousins@xxxxxxxxxxxxxx > >>>>> Marine Sciences, 452 Aubert Hall http:// > >>>>> rocky.umeoce.maine.edu > >>>>> Univ. of Maine, Orono, ME 04469 Phone: (207) 581-4302 > >>>>> > >>>>> > >>>>> On Mon, 28 Jan 2008, Felipe Pimenta wrote: > >>>>> > >>>>>> Hi Roy, > >>>>>> > >>>>>> I did it with "-L/sw/lib/ -lnetcdf" and also trying with and > >>>>>> without > >>>>>> the -fno-second-underscore and -fno-underscoring flags. The > >>>>>> result is > >>>>>> still an error: > >>>>>> > >>>>>> g95 -O5 -o pom.exe pom2k.f areas_masks.o advave.o advq.o > >>>>>> advt1.o > >>>>>> advt2.o advct.o advu.o advv.o baropg.o bcond.o bcondorl.o > >>>>>> box.o dens.o > >>>>>> depth.o file2ic.o findpsi.o printall.o profq.o proft.o profu.o > >>>>>> profv.o > >>>>>> prxy.o prxyz.o prxz.o pryz.o seamount.o slpmax.o smol_adif.o > >>>>>> vertvl.o > >>>>>> def_var_netcdf.o handle_netcdf_error.o write_netcdf.o -L/sw/lib/ > >>>>>> -lnetcdf > >>>>>> ld: Undefined symbols: > >>>>>> _nf_def_var__ > >>>>>> _nf_put_att_text__ > >>>>>> _nf_strerror__ > >>>>>> _nccre_ > >>>>>> ... > >>>>>> ... (long list...) > >>>>>> ... > >>>>>> _nf_set_fill__ > >>>>>> _nf_sync__ > >>>>>> make: *** [pom.exe] Error 1 > >>>>>> > >>>>>> Thanks, > >>>>>> > >>>>>> Felipe > >>>>>> > >>>>>> > >>>>>> > >>>>>> > >>>>>> On Jan 28, 2008 12:38 PM, Roy Mendelssohn > >>>>>> <Roy.Mendelssohn@xxxxxxxx> wrote: > >>>>>>> Okay, I looked more closely at your command line. You have > >>>>>>> > >>>>>>> "-L/sw/lib/libnetcdf.a -lnetcdf" > >>>>>>> > >>>>>>> it should be > >>>>>>> > >>>>>>> "-L/sw/lib/ -lnetcdf" > >>>>>>> > >>>>>>> Give that a try. > >>>>>>> > >>>>>>> -Roy M. > >>>>>>> > >>>>>>> > >>>>>>> On Jan 28, 2008, at 8:51 AM, Felipe Pimenta wrote: > >>>>>>> > >>>>>>>> Dear Ed Hartnett and Roy Mendelssohn, > >>>>>>>> > >>>>>>>> Thanks for your email. I tried to compile the code with the > >>>>>>>> following flags: > >>>>>>>> > >>>>>>>> -fno-second-underscore and > >>>>>>>> -fno-underscoring > >>>>>>>> > >>>>>>>> Together, separated and with g95 and g77. The problem still > >>>>>>>> occurs. I > >>>>>>>> also checked the packages I have from Fink: > >>>>>>>> > >>>>>>>> g95 0.90-3 Another GNU Fortran 1995 compiler > >>>>>>>> netcdf-g95 3.6.2-6 Interface & lib for array-based > >>>>>>>> data access > >>>>>>>> > >>>>>>>> I've rebuild them from source with Fink, but I could not > >>>>>>>> solve the > >>>>>>>> problem. > >>>>>>>> > >>>>>>>> Thanks, > >>>>>>>> > >>>>>>>> Felipe > >>>>>>>> > >>>>>>>> > >>>>>>>> On 1/26/08, Roy Mendelssohn <Roy.Mendelssohn@xxxxxxxx> wrote: > >>>>>>>>> Use whatever is he option that suppresses adding an > >>>>>>>>> underscore to > >>>>>>>>> subroutine names. > >>>>>>>>> > >>>>>>>>> -Roy M. > >>>>>>>>> > >>>>>>>>> On Jan 26, 2008, at 6:16 AM, Felipe Pimenta wrote: > >>>>>>>>> > >>>>>>>>>> Hi, > >>>>>>>>>> > >>>>>>>>>> I currently upgraded the netcdf of my mac power pc OS X > >>>>>>>>>> 10.4.11 to > >>>>>>>>>> netcdf-g95 using fink (I will have to work with g95 in a near > >>>>>>>>>> future). > >>>>>>>>> > >>>>>>>>>> However, a code that I used to run on g77 with netcdf not > >>>>>>>>>> is not > >>>>>>>>>> compiling anymore. I've changed the library file path > >>>>>>>>>> inside the > >>>>>>>>>> fortran subroutine to: > >>>>>>>>>> > >>>>>>>>>> include '/sw/lib/netcdf-g95/include/netcdf.inc' > >>>>>>>>>> > >>>>>>>>>> but the following problem occurs: > >>>>>>>>>> > >>>>>>>>>> g77 -O5 -o pom.exe pom2k.f areas_masks.o advave.o advq.o > >>>>>>>>>> advt1.o > >>>>>>>>>> advt2.o advct.o advu.o advv.o baropg.o bcond.o bcondorl.o > >>>>>>>>>> box.o > >>>>>>>>>> dens.o > >>>>>>>>>> depth.o file2ic.o findpsi.o printall.o profq.o proft.o > >>>>>>>>>> profu.o > >>>>>>>>>> profv.o > >>>>>>>>>> prxy.o prxyz.o prxz.o pryz.o seamount.o slpmax.o smol_adif.o > >>>>>>>>>> vertvl.o > >>>>>>>>>> def_var_netcdf.o handle_netcdf_error.o write_netcdf.o > >>>>>>>>>> -L/sw/lib/libnetcdf.a -lnetcdf > >>>>>>>>>> /usr/bin/ld: Undefined symbols: > >>>>>>>>>> _nf_def_var__ > >>>>>>>>>> _nf_put_att_text__ > >>>>>>>>>> _nf_strerror__ > >>>>>>>>>> _nf_close__ > >>>>>>>>>> _nf_create__ > >>>>>>>>>> _nf_def_dim__ > >>>>>>>>>> _nf_enddef__ > >>>>>>>>>> _nf_put_var_real__ > >>>>>>>>>> _nf_put_vara_real__ > >>>>>>>>>> collect2: ld returned 1 exit status > >>>>>>>>>> make: *** [pom.exe] Error 1 > >>>>>>>>>> > >>>>>>>>>> I also tried to compile the code with g95, without > >>>>>>>>>> success. Does > >>>>>>>>>> anybody have any suggestions? > >>>>>>>>>> > >>>>>>>>>> Thanks a lot, > >>>>>>>>>> > >>>>>>>>>> Felipe > >>>>>>>>>> _______________________________________________ > >>>>>>>>>> netcdfgroup mailing list > >>>>>>>>>> netcdfgroup@xxxxxxxxxxxxxxxx > >>>>>>>>>> For list information or to unsubscribe, visit: http:// > >>>>>>>>>> www.unidata.ucar.edu/mailing_lists/ > >>>>>>>>> > >>>>>>>>> ********************** > >>>>>>>>> "The contents of this message do not reflect any position > >>>>>>>>> of the U.S. > >>>>>>>>> Government or NOAA." > >>>>>>>>> ********************** > >>>>>>>>> Roy Mendelssohn > >>>>>>>>> Supervisory Operations Research Analyst > >>>>>>>>> NOAA/NMFS > >>>>>>>>> Environmental Research Division > >>>>>>>>> Southwest Fisheries Science Center > >>>>>>>>> 1352 Lighthouse Avenue > >>>>>>>>> Pacific Grove, CA 93950-2097 > >>>>>>>>> > >>>>>>>>> e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address) > >>>>>>>>> voice: (831)-648-9029 > >>>>>>>>> fax: (831)-648-8440 > >>>>>>>>> www: http://www.pfeg.noaa.gov/ > >>>>>>>>> > >>>>>>>>> "Old age and treachery will overcome youth and skill." > >>>>>>>>> > >>>>>>>>> > >>>>>>>>> > >>>>>>>>> > >>>>>>>> > >>>>>>>>>>>>> -- > >>>>>>>> ================================= > >>>>>>>> Felipe Mendonca Pimenta > >>>>>>>> College of Marine and Earth Studies > >>>>>>>> University of Delaware, 211 Robinson Hall > >>>>>>>> Newark, DE, 19716-3501 USA > >>>>>>>> Phone: (302) 831-2848, felipe@xxxxxxxx > >>>>>>>> ================================= > >>>>>>> > >>>>>>> ********************** > >>>>>>> "The contents of this message do not reflect any position of > >>>>>>> the U.S. > >>>>>>> Government or NOAA." > >>>>>>> ********************** > >>>>>>> Roy Mendelssohn > >>>>>>> Supervisory Operations Research Analyst > >>>>>>> NOAA/NMFS > >>>>>>> Environmental Research Division > >>>>>>> Southwest Fisheries Science Center > >>>>>>> 1352 Lighthouse Avenue > >>>>>>> Pacific Grove, CA 93950-2097 > >>>>>>> > >>>>>>> e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address) > >>>>>>> voice: (831)-648-9029 > >>>>>>> fax: (831)-648-8440 > >>>>>>> www: http://www.pfeg.noaa.gov/ > >>>>>>> > >>>>>>> "Old age and treachery will overcome youth and skill." > >>>>>>> > >>>>>>> > >>>>>>> > >>>>>>> > >>>>>> > >>>>>> > >>>>>> > >>>>>> -- > >>>>>> ================================= > >>>>>> Felipe Mendonca Pimenta > >>>>>> College of Marine and Earth Studies > >>>>>> University of Delaware, 211 Robinson Hall > >>>>>> Newark, DE, 19716-3501 USA > >>>>>> Phone: (302) 831-2848, felipe@xxxxxxxx > >>>>>> ================================= > >>>>>> _______________________________________________ > >>>>>> netcdfgroup mailing list > >>>>>> netcdfgroup@xxxxxxxxxxxxxxxx > >>>>>> For list information or to unsubscribe, visit: http:// > >>>>>> www.unidata.ucar.edu/mailing_lists/ > >>>>>> > >>>>> > >>>> > >>>> > >>>> > >>> -- > >>> ================================= > >>> Felipe Mendonca Pimenta > >>> College of Marine and Earth Studies > >>> University of Delaware, 211 Robinson Hall > >>> Newark, DE, 19716-3501 USA > >>> Phone: (302) 831-2848, felipe@xxxxxxxx > >>> ================================= > >>> > >> > > > > > > > > -- > > ================================= > > Felipe Mendonca Pimenta > > College of Marine and Earth Studies > > University of Delaware, 211 Robinson Hall > > Newark, DE, 19716-3501 USA > > Phone: (302) 831-2848, felipe@xxxxxxxx > > =================================<output.txt>_________________________ > > > ______________________ > > netcdfgroup mailing list > > netcdfgroup@xxxxxxxxxxxxxxxx > > For list information or to unsubscribe, visit: http:// > > www.unidata.ucar.edu/mailing_lists/ > > ********************** > "The contents of this message do not reflect any position of the U.S. > Government or NOAA." > ********************** > Roy Mendelssohn > Supervisory Operations Research Analyst > NOAA/NMFS > Environmental Research Division > Southwest Fisheries Science Center > 1352 Lighthouse Avenue > Pacific Grove, CA 93950-2097 > > e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address) > voice: (831)-648-9029 > fax: (831)-648-8440 > www: http://www.pfeg.noaa.gov/ > > "Old age and treachery will overcome youth and skill." > > > > -- ================================= Felipe Mendonca Pimenta College of Marine and Earth Studies University of Delaware, 211 Robinson Hall Newark, DE, 19716-3501 USA Phone: (302) 831-2848, felipe@xxxxxxxx =================================
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