NOTICE: This version of the NSF Unidata web site (archive.unidata.ucar.edu) is no longer being updated.
Current content can be found at unidata.ucar.edu.
To learn about what's going on, see About the Archive Site.
NOTICE: This version of the NSF Unidata web site (archive.unidata.ucar.edu) is no longer being updated.
Current content can be found at unidata.ucar.edu.
To learn about what's going on, see About the Archive Site.
Dave,
Thanks, I think it is may be the solution. However I am still a beginner
in the Linux. So please could you tell me what to do.
You said " I suspect that you need to add this to the top of each
program unit that has Netcdf calls:
use netcdf " My question is how ?
Find below a long part of the error. Please have a look.
f_ts.o vdif_uv.o vertvl_edge.o water_depth.o wreal.o ghostuv.o dens3.o
init_sed.o advave_edge_gcy.o advection_edge_gcy.o adv_uv_edge_gcy.o
bcond_gcy.o shape_coef_gcy.o depth_check.o vdif_ts_gom.o adjust_ts.o
shutdown_check.o extelpf_edge.o fct_q2.o fct_q2l.o viscofh.o
print_vals.o rho_mean.o viz.o -L/usr/lib64 -lnetcdf
mod_ncdio.o: In function `__mod_ncdio__handle_ncerr':
mod_ncdio.f90:(.text+0x125): undefined reference to
`__netcdf__nf90_strerror'
mod_ncdio.o: In function `__mod_ncdio__putvar':
mod_ncdio.f90:(.text+0x11e4): undefined reference to
`__netcdf__nf90_put_var_2d_fourbytereal'
mod_ncdio.o: In function `__mod_ncdio__write_netcdf_setup':
mod_ncdio.f90:(.text+0x2122): undefined reference to
`__netcdf__nf90_put_var_1d_fourbytereal'
mod_ncdio.f90:(.text+0x2222): undefined reference to
`__netcdf__nf90_put_var_1d_fourbytereal'
mod_ncdio.f90:(.text+0x231a): undefined reference to
`__netcdf__nf90_put_var_1d_fourbytereal'
.
.
.
mod_ncdio.f90:(.text+0x643d): undefined reference to
`__netcdf__nf90_close'
mod_ncdave.o: In function `__mod_ncdave__handle_ncerr_ave':
mod_ncdave.f90:(.text+0x125): undefined reference to
`__netcdf__nf90_strerror'
mod_ncdave.o: In function `__mod_ncdave__putvar2':
mod_ncdave.f90:(.text+0x1414): undefined reference to
`__netcdf__nf90_put_var_2d_fourbytereal'
mod_ncdave.o: In function `__mod_ncdave__write_netcdf_ave':
mod_ncdave.f90:(.text+0x2365): undefined reference to
`__netcdf__nf90_put_var_1d_fourbytereal'
mod_ncdave.f90:(.text+0x2463): undefined reference to
`__netcdf__nf90_put_var_1d_fourbytereal'
mod_ncdave.f90:(.text+0x2562): undefined reference to
`__netcdf__nf90_put_var_1d_fourbytereal'
mod_ncdave.f90:(.text+0x2605): undefined reference to
`__netcdf__nf90_put_var_fourbytereal'
mod_ncdave.f90:(.text+0x2683): undefined reference to
`__netcdf__nf90_put_var_fourbytereal'
mod_ncdave.f90:(.text+0x2e31): undefined reference to
`__netcdf__nf90_create'
.
.
.
mod_ncdave.f90:(.text+0x5de9): undefined reference to
`__netcdf__nf90_put_att_text'
mod_lag.o: In function `__mod_lag__dump_particles_ncd':
mod_lag.f90:(.text+0x378c): undefined reference to `__netcdf__nf90_open'
mod_lag.f90:(.text+0x37cf): undefined reference to
`__netcdf__nf90_inq_varid'
mod_lag.f90:(.text+0x3837): undefined reference to
`__netcdf__nf90_put_var_fourbytereal'
mod_lag.f90:(.text+0x387d): undefined reference to
`__netcdf__nf90_inq_varid'
mod_lag.f90:(.text+0x38ee): undefined reference to
`__netcdf__nf90_put_var_1d_fourbytereal'
mod_lag.f90:(.text+0x390c): undefined reference to
`__netcdf__nf90_inq_varid'
mod_lag.f90:(.text+0x397d): undefined reference to
`__netcdf__nf90_put_var_1d_fourbytereal'
mod_lag.f90:(.text+0x399b): undefined reference to
`__netcdf__nf90_inq_varid'
mod_lag.f90:(.text+0x3a0c): undefined reference to
`__netcdf__nf90_put_var_1d_fourbytereal'
mod_lag.f90:(.text+0x3a2a): undefined reference to
`__netcdf__nf90_inq_varid'
mod_lag.f90:(.text+0x3a9b): undefined reference to
`__netcdf__nf90_put_var_1d_fourbytereal'
mod_lag.f90:(.text+0x3ad8): undefined reference to
`__netcdf__nf90_inq_varid'
mod_lag.f90:(.text+0x3b6b): undefined reference to
`__netcdf__nf90_put_var_1d_fourbytereal'
mod_lag.f90:(.text+0x3b7c): undefined reference to
`__netcdf__nf90_close'
mod_lag.f90:(.text+0x3dc2): undefined reference to
`__netcdf__nf90_strerror'
mod_lag.f90:(.text+0x3ef8): undefined reference to
`__netcdf__nf90_strerror'
mod_lag.o: In function `__mod_lag__output_lag':
mod_lag.f90:(.text+0x41fa): undefined reference to
`__netcdf__nf90_create'
mod_lag.f90:(.text+0x427e): undefined reference to
`__netcdf__nf90_put_att_text'
mod_lag.f90:(.text+0x42de): undefined reference to
`__netcdf__nf90_put_att_text'
mod_lag.f90:(.text+0x438b): undefined reference to
`__netcdf__nf90_put_att_text'
mod_lag.f90:(.text+0x43d7): undefined reference to
`__netcdf__nf90_put_att_text'
mod_lag.f90:(.text+0x4435): undefined reference to
`__netcdf__nf90_put_att_text'
mod_lag.f90:(.text+0x90f5): undefined reference to
`__netcdf__nf90_strerror'
collect2: ld returned 1 exit status
make: *** [fvcom] Error 1
Thanks
Mohamed Ali
malibec2005@xxxxxxxxx
Mob 00447912033240
SChEME Department
Faculty of Engineering
University of Nottingham
Nottingham (NG7 2RD) UK
Fax: 0044(0)115 951 4115
-----Original Message-----
From: netcdfgroup-bounces@xxxxxxxxxxxxxxxx
[mailto:netcdfgroup-bounces@xxxxxxxxxxxxxxxx] On Behalf Of Dave Allured
Sent: Thursday, November 06, 2008 5:50 PM
To: netcdfgroup@xxxxxxxxxxxxxxxx
Subject: Re: [netcdfgroup] netcdf
Mohamed,
These are missing library symbol errors. I suspect that you need to add
this to the top of each program unit that has Netcdf calls:
use netcdf
This is because the Netcdf Fortran 90 interface uses modules. You can't
properly link to the Netcdf F90 library without this declaration.
For diagnosis, your program is trying to link to this:
__netcdf__nf90_open
But with a correct "use" statement it should be seeking a symbol named
something like this (the name change may vary by compiler and
platform):
___netcdf_MOD_nf90_open
I might be wrong about all of this if you are on a platform or compiler
that uses Fortran 90 linking conventions much different than what I am
familiar with. If "use" doesn't fix it, then please provide
identification and version info for your platform, compiler, and netcdf
version.
Dave Allured
CU/CIRES Climate Diagnostics Center (CDC)
http://cires.colorado.edu/science/centers/cdc/
NOAA/ESRL/PSD, Climate Analysis Branch (CAB) http://www.cdc.noaa.gov/
Mohamed Mohamed wrote:
> I worked with FVCOM software. When I started to get netcdf output type
> I received the following error:
>
> mod_lag.f90:(.text+0x89f6): undefined reference to
> `__netcdf__nf90_put_att_text'
> mod_lag.f90:(.text+0x8a1e): undefined reference to
> `__netcdf__nf90_put_att_text'
> mod_lag.f90:(.text+0x8a36): undefined reference to
> `__netcdf__nf90_enddef'
> mod_lag.f90:(.text+0x8a45): undefined reference to
> `__netcdf__nf90_close'
> mod_lag.f90:(.text+0x8a69): undefined reference to
`__netcdf__nf90_open'
> mod_lag.f90:(.text+0x8b00): undefined reference to
> `__netcdf__nf90_put_var_1d_fourbytereal'
> mod_lag.f90:(.text+0x8b74): undefined reference to
> `__netcdf__nf90_put_var_1d_fourbytereal'
> mod_lag.f90:(.text+0x8be8): undefined reference to
> `__netcdf__nf90_put_var_1d_fourbytereal'
> mod_lag.f90:(.text+0x8c57): undefined reference to
> `__netcdf__nf90_put_var_1d_fourbytereal'
> mod_lag.f90:(.text+0x8ccb): undefined reference to
> `__netcdf__nf90_put_var_1d_fourbytereal'
> mod_lag.o:mod_lag.f90:(.text+0x8d3f): more undefined references to
> `__netcdf__nf90_put_var_1d_fourbytereal' follow
> mod_lag.o: In function `__mod_lag__dump_lag_restart':
> mod_lag.f90:(.text+0x8dae): undefined reference to
> `__netcdf__nf90_put_var_1d_fourbyteint'
> mod_lag.f90:(.text+0x8e25): undefined reference to
> `__netcdf__nf90_put_var_1d_fourbyteint'
> mod_lag.f90:(.text+0x8e34): undefined reference to
> `__netcdf__nf90_close'
> mod_lag.f90:(.text+0x90f5): undefined reference to
> `__netcdf__nf90_strerror'
> collect2: ld returned 1 exit status
> make: *** [fvcom] Error 1
> [enxmabm@caunton FVCOM_source]
>
>
> Any ideas?
>
> Thanks
>
>
> Mali
> SChEME Department
> Faculty of Engineering
> University of Nottingham
> Nottingham (NG7 2RD) UK
> Fax: 0044(0)115 951 4115
>
> This message has been checked for viruses but the contents of an
> attachment may still contain software viruses, which could damage your
computer system:
> you are advised to perform your own checks. Email communications with
> the University of Nottingham may be monitored as permitted by UK
legislation.
>
> _______________________________________________
> netcdfgroup mailing list
> netcdfgroup@xxxxxxxxxxxxxxxx
> For list information or to unsubscribe, visit:
> http://www.unidata.ucar.edu/mailing_lists/
_______________________________________________
netcdfgroup mailing list
netcdfgroup@xxxxxxxxxxxxxxxx
For list information or to unsubscribe, visit:
http://www.unidata.ucar.edu/mailing_lists/
This message has been checked for viruses but the contents of an attachment
may still contain software viruses, which could damage your computer system:
you are advised to perform your own checks. Email communications with the
University of Nottingham may be monitored as permitted by UK legislation.
netcdfgroup archives: