[netcdfgroup] a compile error with netcdf-4.0.1

• To: netcdfgroup@xxxxxxxxxxxxxxxx
• Subject: [netcdfgroup] a compile error with netcdf-4.0.1
• From: brick <brickflying@xxxxxxxxx>
• Date: Tue, 13 Oct 2009 16:20:43 -0500

Hi

I met a compile error with netcdf-4.0.1

this is the configure used to compile netcdf source code
./configure --with-hdf5=/home/qiuxb/program/hdf5-1.8.3
--with-zlib=/home/qiuxb/program/zlib-1.2.3
--prefix=/home/qiuxb/program/netcdf-4.0.1 --disable-f90 --enable-netcdf-4
netcdf and hdf5 are both compiled by icc

this is the compile option for ifort
-L$(NETCDF_LIB) -lnetcdf _L$(HDF5_LIB) -lhdf5_hl -lhdf5 -lz

the error information is:
ifort -o `pwd`/rnc.x ./r.o -L/home/qiuxb/program/netcdf-4.0.1/lib -lnetcdf
_L/home/qiuxb/program/hdf5-1.8.3/lib -lhdf5_hl -lhdf5
-lz
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4var.o): In function
`nc_rename_var':

nc4var.c:(.text+0x7c51): undefined reference to
`H5Gmove'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4file.o): In function
`nc__open':
nc4file.c:(.text+0x883): undefined reference to
`H5Eset_auto1'
nc4file.c:(.text+0xa32): undefined reference to
`H5Pset_libver_bounds'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4file.o): In function
`nc_open':
nc4file.c:(.text+0xbd4): undefined reference to
`H5Eset_auto1'
nc4file.c:(.text+0xd81): undefined reference to
`H5Pset_libver_bounds'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4file.o): In function
`nc_open_par':

nc4file.c:(.text+0xf5e): undefined reference to
`H5Eset_auto1'
nc4file.c:(.text+0x110b): undefined reference to
`H5Pset_libver_bounds'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4file.o): In function
`nc__open_mp':

nc4file.c:(.text+0x12c4): undefined reference to
`H5Eset_auto1'
nc4file.c:(.text+0x146f): undefined reference to
`H5Pset_libver_bounds'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4file.o): In function
`nc_create_par':

nc4file.c:(.text+0x1655): undefined reference to
`H5Eset_auto1'
nc4file.c:(.text+0x17eb): undefined reference to
`H5Pset_libver_bounds'
nc4file.c:(.text+0x181c): undefined reference to
`H5Pset_link_creation_order'
nc4file.c:(.text+0x182d): undefined reference to
`H5Pset_attr_creation_order'
nc4file.c:(.text+0x1865): undefined reference to
`H5Gopen2'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4file.o): In function
`nc__create_mp':

nc4file.c:(.text+0x1963): undefined reference to
`H5Eset_auto1'
nc4file.c:(.text+0x1ae7): undefined reference to
`H5Pset_libver_bounds'
nc4file.c:(.text+0x1b15): undefined reference to
`H5Pset_link_creation_order'
nc4file.c:(.text+0x1b25): undefined reference to
`H5Pset_attr_creation_order'
nc4file.c:(.text+0x1b5d): undefined reference to
`H5Gopen2'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4file.o): In function
`nc__create':

nc4file.c:(.text+0x1c5e): undefined reference to
`H5Eset_auto1'
nc4file.c:(.text+0x1de4): undefined reference to
`H5Pset_libver_bounds'
nc4file.c:(.text+0x1e0e): undefined reference to
`H5Pset_link_creation_order'
nc4file.c:(.text+0x1e1e): undefined reference to
`H5Pset_attr_creation_order'
nc4file.c:(.text+0x1e54): undefined reference to
`H5Gopen2'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4file.o): In function
`nc_create':

nc4file.c:(.text+0x1f2f): undefined reference to
`H5Eset_auto1'
nc4file.c:(.text+0x20c5): undefined reference to
`H5Pset_libver_bounds'
nc4file.c:(.text+0x20f6): undefined reference to
`H5Pset_link_creation_order'
nc4file.c:(.text+0x2107): undefined reference to
`H5Pset_attr_creation_order'
nc4file.c:(.text+0x213f): undefined reference to
`H5Gopen2'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`nc4_open_var_grp':

nc4hdf.c:(.text+0xfd1): undefined reference to
`H5Dopen1'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`nc4_rec_read_metadata':

nc4hdf.c:(.text+0x1079): undefined reference to
`H5Gopen2'
nc4hdf.c:(.text+0x10f5): undefined reference to
`H5Oget_info_by_idx'
nc4hdf.c:(.text+0x1129): undefined reference to
`H5Lget_name_by_idx'
nc4hdf.c:(.text+0x116f): undefined reference to
`H5Lget_name_by_idx'
nc4hdf.c:(.text+0x1233): undefined reference to
`H5Gopen2'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`pg_att_grpa':

nc4hdf.c:(.text+0x1b6a): undefined reference to
`H5Acreate1'
nc4hdf.c:(.text+0x1f3c): undefined reference to
`H5Dopen1'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`read_type':
nc4hdf.c:(.text+0x1fef): undefined reference to
`H5Topen2'
nc4hdf.c:(.text+0x2569): undefined reference to
`H5Tget_array_dims1'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`read_dataset':

nc4hdf.c:(.text+0x25e8): undefined reference to
`H5Dopen1'
nc4hdf.c:(.text+0x2687): undefined reference to
`H5DSis_scale'
nc4hdf.c:(.text+0x277f): undefined reference to
`H5DSget_scale_name'
nc4hdf.c:(.text+0x2882): undefined reference to
`H5DSget_num_scales'
nc4hdf.c:(.text+0x2a65): undefined reference to
`H5Pget_filter2'
nc4hdf.c:(.text+0x2d68): undefined reference to
`H5DSiterate_scales'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`nc4_open_var_grp2':

nc4hdf.c:(.text+0x6e5a): undefined reference to
`H5Dopen1'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`nc4_rec_write_metadata':

nc4hdf.c:(.text+0x8bef): undefined reference to
`H5P_CLS_GROUP_CREATE_g'
nc4hdf.c:(.text+0x8c0a): undefined reference to
`H5Pset_link_creation_order'
nc4hdf.c:(.text+0x8c1a): undefined reference to
`H5Pset_attr_creation_order'
nc4hdf.c:(.text+0x8c38): undefined reference to
`H5Gcreate2'
nc4hdf.c:(.text+0x8f0b): undefined reference to
`H5Gopen2'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`commit_type':

nc4hdf.c:(.text+0x90a5): undefined reference to
`H5Tcommit1'
nc4hdf.c:(.text+0x917e): undefined reference to
`H5Tarray_create1'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`write_dim':
nc4hdf.c:(.text+0x972c): undefined reference to
`H5Pset_attr_creation_order'
nc4hdf.c:(.text+0x9754): undefined reference to
`H5Dcreate1'
nc4hdf.c:(.text+0x97ac): undefined reference to
`H5DSset_scale'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`write_var':
nc4hdf.c:(.text+0x9a91): undefined reference to `H5Oget_info_by_idx'
nc4hdf.c:(.text+0x9abe): undefined reference to `H5Lget_name_by_idx'
nc4hdf.c:(.text+0x9afc): undefined reference to `H5Lget_name_by_idx'
nc4hdf.c:(.text+0x9e26): undefined reference to `H5Pset_attr_creation_order'
nc4hdf.c:(.text+0x9e54): undefined reference to `H5Dcreate1'
nc4hdf.c:(.text+0x9e87): undefined reference to `H5DSset_scale'
nc4hdf.c:(.text+0xa008): undefined reference to `H5DSattach_scale'
nc4hdf.c:(.text+0xa1a3): undefined reference to `H5DSattach_scale'
nc4hdf.c:(.text+0xa236): undefined reference to `H5DSdetach_scale'
nc4hdf.c:(.text+0xa2f5): undefined reference to `H5DSdetach_scale'
nc4hdf.c:(.text+0xa8ee): undefined reference to `H5Acreate1'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`rec_reattach_scales':
nc4hdf.c:(.text+0xaa9d): undefined reference to `H5DSattach_scale'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`write_attlist':
nc4hdf.c:(.text+0xadf8): undefined reference to `H5Acreate1'
nc4hdf.c:(.text+0xaffd): undefined reference to `H5Dopen1'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`write_nc3_strict_att':
nc4hdf.c:(.text+0xb0fe): undefined reference to `H5Acreate1'
/home/qiuxb/program/netcdf-4.0.1/lib/libnetcdf.a(nc4hdf.o): In function
`attach_dimscales':
nc4hdf.c:(.text+0xb307): undefined reference to `H5DSattach_scale'
make: *** [`pwd`/rnc.x] Error 1

thanks a lot

brick