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Roy, I got the same thing using gcc/gfortran from hpc.sourceforge.net/. But then it all worked fine when I set CFLAGS=-m32 FCFLAGS=-m32 CXXFLAGS=-m32 export CFLAGS FCFLAGS CXXFLAGS before running configure. Maybe like mine, your libhdf5.a was compiled with "-m32". --Russ > I am running 10.6.4, compiling static, to a local directory, using fink compi > lers. make ran okay. "make check" failed as follows: > > ================== > > All 2 tests passed > > ================== > > Making check in ncdump > > make check-recursive > > Making check in cdl4 > > make[3]: Nothing to be done for `check'. > > Making check in expected4 > > make[3]: Nothing to be done for `check'. > > make rewrite-scalar ctest ctest64 ncdump tst_utf8 tst_create_files tst_h_r > dc0 tst_group_data tst_enum_data tst_opaque_data tst_string_data tst_vlen_dat > a tst_comp tst_comp2 tst_nans tst_special_atts tst_unicode tst_fillbug > > depbase=`echo rewrite-scalar.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ > > /sw/bin/gcc-4 -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../include -I../ > nc_test -I../liblib -I/netcdf4Static/local/include -I/netcdf4Static/local/in > clude -I/netcdf4Static/local/include -I/sw/include -g -O2 -MT rewrite-scala > r.o -MD -MP -MF $depbase.Tpo -c -o rewrite-scalar.o rewrite-scalar.c &&\ > > mv -f $depbase.Tpo $depbase.Po > > /bin/sh ../libtool --tag=CC --mode=link /sw/bin/gcc-4 -g -O2 -o rewrit > e-scalar rewrite-scalar.o -lm ../liblib/libnetcdf.la -L/netcdf4Static/local/ > lib -lhdf5_hl -lhdf5 -L/netcdf4Static/local/lib -lz -L/netcdf4Static/local/li > b -lsz -L/sw/lib -lcurl > > libtool: link: /sw/bin/gcc-4 -g -O2 -o rewrite-scalar rewrite-scalar.o ../ > liblib/.libs/libnetcdf.a -L/netcdf4Static/local/lib -L/sw/lib /netcdf4Static/ > local/lib/libhdf5_hl.a /netcdf4Static/local/lib/libhdf5.a -lm -lz /netcdf4sta > tic/local/lib/libsz.dylib /sw/lib/libcurl.dylib > > depbase=`echo ctest.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ > > /sw/bin/gcc-4 -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../include -I../ > nc_test -I../liblib -I/netcdf4Static/local/include -I/netcdf4Static/local/in > clude -I/netcdf4Static/local/include -I/sw/include -g -O2 -MT ctest.o -MD - > MP -MF $depbase.Tpo -c -o ctest.o ctest.c &&\ > > mv -f $depbase.Tpo $depbase.Po > > /bin/sh ../libtool --tag=CC --mode=link /sw/bin/gcc-4 -g -O2 -o ctest > ctest.o -lm ../liblib/libnetcdf.la -L/netcdf4Static/local/lib -lhdf5_hl -lhd > f5 -L/netcdf4Static/local/lib -lz -L/netcdf4Static/local/lib -lsz -L/sw/lib - > lcurl > > libtool: link: /sw/bin/gcc-4 -g -O2 -o ctest ctest.o ../liblib/.libs/libne > tcdf.a -L/netcdf4Static/local/lib -L/sw/lib /netcdf4Static/local/lib/libhdf5_ > hl.a /netcdf4Static/local/lib/libhdf5.a -lm -lz /netcdf4static/local/lib/libs > z.dylib /sw/lib/libcurl.dylib > > Undefined symbols: > > "_main", referenced from: > > start in crt1.10.5.o > > ld: symbol(s) not found > > collect2: ld returned 1 exit status > > make[4]: *** [ctest] Error 1 > > make[3]: *** [check-am] Error 2 > > make[2]: *** [check-recursive] Error 1 > > make[1]: *** [check] Error 2 > > make: *** [check-recursive] Error 1 > > > > -Roy > > On Jul 12, 2010, at 1:04 PM, Jeff Whitaker wrote: > > > On 7/12/10 2:03 PM, Sean McBride wrote: > >> On Mon, 12 Jul 2010 13:11:02 -0600, Jeff Whitaker said: > >> > >>> It looks like the C lib refactoring may be a problem on OSX.. > >>> > >>> ld: duplicate symbol _nc_inq_att in > >>> .libs/libnetcdf.lax/libncdap4.a/att.o and > >>> .libs/libnetcdf.lax/libdispatch.a/att.o > >>> > >>> (error when linking libnetcdf.dylib) > >> I wonder if that's because OS X comes with something named libdispatch > >> already: > >> > >> <http://en.wikipedia.org/wiki/Libdispatch> > >> > > I'm not running 10.6. > > > > -Jeff > > > > -- > > Jeffrey S. Whitaker Phone : (303)497-6313 > > Meteorologist FAX : (303)497-6449 > > NOAA/OAR/PSD R/PSD1 Email : Jeffrey.S.Whitaker@xxxxxxxx > > 325 Broadway Office : Skaggs Research Cntr 1D-113 > > Boulder, CO, USA 80303-3328 Web : http://tinyurl.com/5telg > > > > _______________________________________________ > > netcdfgroup mailing list > > netcdfgroup@xxxxxxxxxxxxxxxx > > For list information or to unsubscribe, visit: http://www.unidata.ucar.edu > /mailing_lists/ > > ********************** > "The contents of this message do not reflect any position of the U.S. Governm > ent or NOAA." > ********************** > Roy Mendelssohn > Supervisory Operations Research Analyst > NOAA/NMFS > Environmental Research Division > Southwest Fisheries Science Center > 1352 Lighthouse Avenue > Pacific Grove, CA 93950-2097 > > e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address) > voice: (831)-648-9029 > fax: (831)-648-8440 > www: http://www.pfeg.noaa.gov/ > > "Old age and treachery will overcome youth and skill." > "From those who have been given much, much will be expected" > > _______________________________________________ > netcdfgroup mailing list > netcdfgroup@xxxxxxxxxxxxxxxx > For list information or to unsubscribe, visit: http://www.unidata.ucar.edu/m > ailing_lists/
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