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On 7/12/10 2:19 PM, Roy Mendelssohn wrote:
I am running 10.6.4, compiling static, to a local directory, using fink compilers. make ran okay. "make check" failed as follows:
compiling static works for me, but --enable-shared results in those duplicate symbol errors.
make check passes with the static compilation on 10.5. -Jeff
==================All 2 tests passed ================== Making check in ncdump make check-recursive Making check in cdl4 make[3]: Nothing to be done for `check'. Making check in expected4 make[3]: Nothing to be done for `check'. make rewrite-scalar ctest ctest64 ncdump tst_utf8 tst_create_files tst_h_rdc0 tst_group_data tst_enum_data tst_opaque_data tst_string_data tst_vlen_data tst_comp tst_comp2 tst_nans tst_special_atts tst_unicode tst_fillbug depbase=`echo rewrite-scalar.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /sw/bin/gcc-4 -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../include -I../nc_test -I../liblib -I/netcdf4Static/local/include -I/netcdf4Static/local/include -I/netcdf4Static/local/include -I/sw/include -g -O2 -MT rewrite-scalar.o -MD -MP -MF $depbase.Tpo -c -o rewrite-scalar.o rewrite-scalar.c&&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /sw/bin/gcc-4 -g -O2 -o rewrite-scalar rewrite-scalar.o -lm ../liblib/libnetcdf.la -L/netcdf4Static/local/lib -lhdf5_hl -lhdf5 -L/netcdf4Static/local/lib -lz -L/netcdf4Static/local/lib -lsz -L/sw/lib -lcurl libtool: link: /sw/bin/gcc-4 -g -O2 -o rewrite-scalar rewrite-scalar.o ../liblib/.libs/libnetcdf.a -L/netcdf4Static/local/lib -L/sw/lib /netcdf4Static/local/lib/libhdf5_hl.a /netcdf4Static/local/lib/libhdf5.a -lm -lz /netcdf4static/local/lib/libsz.dylib /sw/lib/libcurl.dylib depbase=`echo ctest.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /sw/bin/gcc-4 -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../include -I../nc_test -I../liblib -I/netcdf4Static/local/include -I/netcdf4Static/local/include -I/netcdf4Static/local/include -I/sw/include -g -O2 -MT ctest.o -MD -MP -MF $depbase.Tpo -c -o ctest.o ctest.c&&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /sw/bin/gcc-4 -g -O2 -o ctest ctest.o -lm ../liblib/libnetcdf.la -L/netcdf4Static/local/lib -lhdf5_hl -lhdf5 -L/netcdf4Static/local/lib -lz -L/netcdf4Static/local/lib -lsz -L/sw/lib -lcurl libtool: link: /sw/bin/gcc-4 -g -O2 -o ctest ctest.o ../liblib/.libs/libnetcdf.a -L/netcdf4Static/local/lib -L/sw/lib /netcdf4Static/local/lib/libhdf5_hl.a /netcdf4Static/local/lib/libhdf5.a -lm -lz /netcdf4static/local/lib/libsz.dylib /sw/lib/libcurl.dylib Undefined symbols: "_main", referenced from: start in crt1.10.5.o ld: symbol(s) not found collect2: ld returned 1 exit status make[4]: *** [ctest] Error 1 make[3]: *** [check-am] Error 2 make[2]: *** [check-recursive] Error 1 make[1]: *** [check] Error 2 make: *** [check-recursive] Error 1-Roy On Jul 12, 2010, at 1:04 PM, Jeff Whitaker wrote:On 7/12/10 2:03 PM, Sean McBride wrote:On Mon, 12 Jul 2010 13:11:02 -0600, Jeff Whitaker said:It looks like the C lib refactoring may be a problem on OSX.. ld: duplicate symbol _nc_inq_att in .libs/libnetcdf.lax/libncdap4.a/att.o and .libs/libnetcdf.lax/libdispatch.a/att.o (error when linking libnetcdf.dylib)I wonder if that's because OS X comes with something named libdispatch already: <http://en.wikipedia.org/wiki/Libdispatch>I'm not running 10.6. -Jeff -- Jeffrey S. Whitaker Phone : (303)497-6313 Meteorologist FAX : (303)497-6449 NOAA/OAR/PSD R/PSD1 Email : Jeffrey.S.Whitaker@xxxxxxxx 325 Broadway Office : Skaggs Research Cntr 1D-113 Boulder, CO, USA 80303-3328 Web : http://tinyurl.com/5telg _______________________________________________ netcdfgroup mailing list netcdfgroup@xxxxxxxxxxxxxxxx For list information or to unsubscribe, visit: http://www.unidata.ucar.edu/mailing_lists/********************** "The contents of this message do not reflect any position of the U.S. Government or NOAA." ********************** Roy Mendelssohn Supervisory Operations Research Analyst NOAA/NMFS Environmental Research Division Southwest Fisheries Science Center 1352 Lighthouse Avenue Pacific Grove, CA 93950-2097 e-mail: Roy.Mendelssohn@xxxxxxxx (Note new e-mail address) voice: (831)-648-9029 fax: (831)-648-8440 www: http://www.pfeg.noaa.gov/ "Old age and treachery will overcome youth and skill." "From those who have been given much, much will be expected"
-- Jeffrey S. Whitaker Phone : (303)497-6313 Meteorologist FAX : (303)497-6449 NOAA/OAR/PSD R/PSD1 Email : Jeffrey.S.Whitaker@xxxxxxxx 325 Broadway Office : Skaggs Research Cntr 1D-113 Boulder, CO, USA 80303-3328 Web : http://tinyurl.com/5telg
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