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Just for the record, I had the same problem when I tried to build 4.1.2 on several different systems (Linux and MacOS), and I do have HDF5, szip, zlib, etc all in the same bin, include, lib directories. In my case, I edited the "./configure" program to force LIBS to include "-lsz", and that seemed to fix the problem. Setting the LIBS env var probably would have worked too. --Mary On May 6, 2011, at 4:20 PM, Chad Herman wrote: > On 05/06/2011 06:01 PM, Ed Hartnett wrote: >> Chad Herman<chad.herman.us@xxxxxxxxx> writes: >> >>> I fixed the problem by defining some environmental variables: >>> >>> export CPPFLAGS="-fPIC -I/usr/local/zlib-1.2.5/include >>> -I/usr/local/szip-2.1/include -I/usr/local/hdf5-1.8.6/include" >>> export LDFLAGS="-L/usr/local/zlib-1.2.5/lib -L/usr/local/szip-2.1/lib >>> -L/usr/local/netcdf-4.1.2/lib -lnetcdff -lnetcdf >>> -L/usr/local/hdf5-1.8.6/lib -lhdf5_hl -lhdf5 >>> -L/usr/local/zlib-1.2.5/lib -lz -lm -lhdf5_hl -lhdf5 -lz -lm -lsz >>> -L/usr/local/szip-2.1/lib -lsz -lhdf5_hl -lhdf5 -lz -lm >>> -lsz-L/usr/local/hdf5-1.8.6/lib" >>> export LIBS="-lm -lsz" >>> >>> Now I can get through configure and build. The only issue I have left, >>> which admittedly is an aesthetic annoyance, is that nc-config returns >>> repeated library paths and names: >>> >>> -L/usr/local/netcdf-4.1.2/lib -lnetcdf -L/usr/local/hdf5-1.8.6/lib >>> -lhdf5_hl -lhdf5 -L/usr/local/zlib-1.2.5/lib -lz -lm -lhdf5_hl -lhdf5 >>> -lz -lm -lsz -L/usr/local/szip-2.1/lib -lsz -lhdf5_hl -lhdf5 -lz -lm >>> -lsz -L/usr/local/hdf5-1.8.6/lib -lhdf5_hl -lhdf5 >>> -L/usr/local/zlib-1.2.5/lib -lz -L/usr/local/szip-2.1/lib -lsz >>> >>> This is undoubtedly because of LDFLAGS and LIBS variables. Is there a >>> way to successfully build with out having to define LDFLAGS and LIBS? >>> >> >> The way to avoid all that is to install the latest version of each >> library in the same directory, and use only that. >> >> Thanks, >> >> Ed >> > > I used to keep all of my libraries in /usr/local, but at some point, the > include and lib folders became unmanageable. I want to keep the library > directories separate. > > Chad > > _______________________________________________ > netcdfgroup mailing list > netcdfgroup@xxxxxxxxxxxxxxxx > For list information or to unsubscribe, visit: > http://www.unidata.ucar.edu/mailing_lists/
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