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I was able to compile HDF5-1.8.8 on OSX Lion. I used intel 12 compilers, and was only able to compile netcdf 4.1.2 with it, though no luck with netcdf 4.1.3. -Erik HDF5-1.8.8 export F77=ifort export FC=ifort export FCFLAGS='-O3 -ip' export FFLAGS='-O3 -ip' export CC=icc export CFLAGS='-O3 -ip' export CXX=icpc export CXXFLAGS='-O3 -ip' ./configure --with-zlib=$HOME/local/zlib/zlib_intel_12.0 --with-szlib=/$HOME/local/szip/szip_intel_12.0 --prefix=$HOME/local/hdf5/hdf5_1.8.8_ifort-icc_12.0 --enable-fortran --enable-cxx NETCDF 4 (4.1.2) ./configure --with-hdf5=$HOME/local/hdf5/hdf5_1.8.8_ifort-icc_12.0 --with-zlib=$HOME/local/zlib/zlib_intel_12.0 --with-szlib=$HOME/local/szip/szip_intel_12.0 --prefix=$HOME/local/netcdf/netcdf_4.1.2_ifort-icc_12.0_with_hdf5-8.8 --enable-netcdf-4 _______________________________________________________ Erik Noble Graduate Research NASA Goddard Institute for Space Studies University of Colorado, Environmental Studies 2880 Broadway, New York, NY-10025, USA Tel: +1 (212) 678-5512; Fax: +1 (212) 678-5552 E-mail: erik.noble@xxxxxxxx, erik.noble@xxxxxxxxxxxx WEB: http://www.giss.nasa.gov/staff/enoble.html GISS: http://www.giss.nasa.gov CCSR: http://www.ccsr.columbia.edu _______________________________________________________ On Dec 2, 2011, at 5:15 PM, Dr. Kenneth P. Bowman wrote: > On Dec 2, 2011, at 3:28 PM, Dave Allured wrote: > >> [[Please fix your subject line]] > > Sorry, my fault. > > I am using the compiler that comes from Apple with XCode, which apparently is > 4.2. > > $ gcc -version > i686-apple-darwin11-llvm-gcc-4.2: no input files > > Ken > > >> >> Ken et al, >> >> My IT team also got a successful build of netCDF 4.1.3 with HDF-1.8.8 on Mac >> Pro with OS X 10.7.2. We did *not* get any conversion test failures like >> you did. >> >> This may be related to GCC version. We used GCC 4.5.3 from Mac Ports, not >> Apple default which is older, not 4.6.*. This may be a reasonable >> workaround. What C compiler are you using? >> >> mac27:/usr/local/src/hdf5-1.8.8 78> \ >> ? grep gcc- install.gfortran >> compiler 'gcc' is GNU gcc-4.5.3 >> >> mac27:/usr/local/src/hdf5-1.8.8 79> \ >> ? grep -e 'hard.*long double.*char' install.gfortran >> Testing hard normalized long double -> signed char conversions PASSED >> Testing hard normalized long double -> unsigned char conversions PASSED >> Testing hard denormalized long double -> signed char conversions PASSED >> Testing hard denormalized long double -> unsigned char conversions PASSED >> Testing hard special long double -> signed char conversions PASSED >> Testing hard special long double -> unsigned char conversions PASSED >> >> Note there is a high priority bug, maybe related to GCC version, currently >> being addressed by the HDF group. The symptoms are similar to yours. >> >> http://mail.hdfgroup.org/pipermail/hdf-forum_hdfgroup.org/2011-November/005314.html >> >> --Dave >> >> On 12/2/2011 12:35 PM, Dr. Kenneth P. Bowman wrote: >>> FYI, I just tried building netCDF with HDF-1.8.8 on a Mac Pro >>> running OS X 10.7.2 (Lion). >>> >>> Zlib installs fine, but HDF5 will not build properly. I get the same >>> error running 'make check' whether I use HDF5-1.8.6, 1.8.7, or 1.8.8 >>> (see below). >>> >>> The response from HDFGroup is "use OS X 10.6.8". Unfortunately all >>> new Macs come with 10.7, and downgrading is not really an option. >>> >>> NetCDF 4.1.3 without HDF5 built just fine. Thanks, guys! >>> >>> Ken Bowman >>> >>> >>> Testing hard normalized float -> unsigned long conversions PASSED >>> Testing hard normalized double -> unsigned long conversions PASSED >>> Testing hard normalized long double -> signed char conversions >>> Command terminated abnormally. >>> 1.61 real 0.09 user 0.03 sys >>> make[4]: *** [dt_arith.chkexe_] Error 1 >>> make[3]: *** [build-check-s] Error 2 >>> make[2]: *** [test] Error 2 >>> make[1]: *** [check-am] Error 2 >>> make: *** [check-recursive] Error 1 >>> >>> >>>> Date: Thu, 01 Dec 2011 12:39:15 -0700 >>>> From: Russ Rew <russ@xxxxxxxxxxxxxxxx <mailto:russ@xxxxxxxxxxxxxxxx>> >>>> To: Roy Mendelssohn <Roy.Mendelssohn@xxxxxxxx >>>> <mailto:Roy.Mendelssohn@xxxxxxxx>> >>>> Cc: NetCDF Group List <netcdfgroup@xxxxxxxxxxxxxxxx >>>> <mailto:netcdfgroup@xxxxxxxxxxxxxxxx>> >>>> Subject: Re: [netcdfgroup] HDF5-1.8.8 >>>> >>>> Hi Roy, >>>> >>>>> HDF5-1.8.8 has been announced. Is this a recommended change for >>>>> netcdf? >>>>> Does the most recent library work with it? >>>> >>>> We've tested on a Fedora 16 platform and verified that HDF5-1.8.8 >>>> works >>>> fine with both netCDF-4.1.3 and with the current snapshot release, >>>> which >>>> will soon be a beta release of netCDF-4.2. However, we haven't tested >>>> with HDF5-1.8.8 on other platforms yet. >>>> >>>> When netCDF-4.2 is released, we'll recommend building it with the most >>>> recent HDF5-1.8.x version (unless you build with >>>> --disable-netcdf-4, in >>>> which case you won't need HDF5). >>>> >>>> --Russ > > ____________________________________________________________________________ > Kenneth P. Bowman > Professor and Department Head > Department of Atmospheric Sciences > Texas A&M University > 3150 TAMU > College Station, TX 77843-3150 > > k-bowman@xxxxxxxx > Voice 979-845-7671 > Fax 979-862-4060 > > http://atmo.tamu.edu/profile/KBowman > > > > > > > _______________________________________________ > netcdfgroup mailing list > netcdfgroup@xxxxxxxxxxxxxxxx > For list information or to unsubscribe, visit: > http://www.unidata.ucar.edu/mailing_lists/
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