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NOTICE: This version of the NSF Unidata web site (archive.unidata.ucar.edu) is no longer being updated.
Current content can be found at unidata.ucar.edu.
To learn about what's going on, see About the Archive Site.
Dear Sir, We are compiling netcdf-4.1.1 with hdf5-1.8.4-patch1 and zlib-1.2.7. make check command on hdf5 and zlib has not returned any failures & hence we guess it has been successfully installed on our system (IBM AIX6). the configure command for building netcdf: ./configure --prefix=/home/iitm/Jayant/netcdf-4.1.1-hdf --enable-netcdf-4 --with-hdf5=/home/iitm/Jayant/hdf5-1.8.4-patch1 --with-zlib=/home/iitm/Jayant/zlib-1.2.7 The make command returns the following error: Making all in ncgen3 source='main.c' object='main.o' libtool=no DEPDIR=.deps depmode=aix/bin/sh ../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include -I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o main.o main.c source='load.c' object='load.o' libtool=no DEPDIR=.deps depmode=aix /bin/sh ../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include -I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o load.o load.c source='escapes.c' object='escapes.o' libtool=no DEPDIR=.deps depmode=aix /bin/sh ../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include -I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o escapes.o escapes.c source='getfill.c' object='getfill.o' libtool=no DEPDIR=.deps depmode=aix /bin/sh ../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include -I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o getfill.o getfill.c source='init.c' object='init.o' libtool=no DEPDIR=.deps depmode=aix /bin/sh ../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include -I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o init.o init.c source='genlib.c' object='genlib.o' libtool=no DEPDIR=.deps depmode=aix /bin/sh ../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include -I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o genlib.o genlib.c source='ncgentab.c' object='ncgentab.o' libtool=no DEPDIR=.deps depmode=aix /bin/sh ../depcomp xlc_r -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/home/iitm/Jayant/hdf5-1.8.4-patch1/include -I/home/iitm/Jayant/zlib-1.2.7/include -O -qmaxmem=-1 -qarch=auto -c -o ncgentab.o ncgentab.c /bin/sh ../libtool --tag=CC --mode=link xlc_r -O -qmaxmem=-1 -qarch=auto -L/home/iitm/Jayant/hdf5-1.8.4-patch1/lib -L/home/iitm/Jayant/zlib-1.2.7/lib -o ncgen3 main.o load.o escapes.o getfill.o init.o genlib.o ncgentab.o ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lz -lmlibtool: link: xlc_r -O -qmaxmem=-1 -qarch=auto -o ncgen3 main.o load.o escapes.o getfill.o init.o genlib.o ncgentab.o -L/home/iitm/Jayant/hdf5-1.8.4-patch1/lib -L/home/iitm/Jayant/zlib-1.2.7/lib ../libsrc4/.libs/libnetcdf.a /home/iitm/Jayant/hdf5-1.8.4-patch1/lib/libhdf5_hl.a /home/iitm/Jayant/hdf5-1.8.4-patch1/lib/libhdf5.a -lz -lm ld: 0711-317 ERROR: Undefined symbol: .H5Tclose ld: 0711-317 ERROR: Undefined symbol: .H5Gmove2 ld: 0711-317 ERROR: Undefined symbol: .H5Dextend ld: 0711-317 ERROR: Undefined symbol: .H5open ld: 0711-317 ERROR: Undefined symbol: H5P_CLS_DATASET_CREATE_g ld: 0711-317 ERROR: Undefined symbol: .H5Pcreate ld: 0711-317 ERROR: Undefined symbol: .H5Pset_chunk ld: 0711-317 ERROR: Undefined symbol: .H5Screate_simple ld: 0711-317 ERROR: Undefined symbol: .H5Pset_attr_creation_order ld: 0711-317 ERROR: Undefined symbol: H5T_IEEE_F32BE_g ld: 0711-317 ERROR: Undefined symbol: .H5Dcreate1 ld: 0711-317 ERROR: Undefined symbol: .H5Sclose ld: 0711-317 ERROR: Undefined symbol: .H5Pclose ld: 0711-317 ERROR: Undefined symbol: .H5DSset_scale ld: 0711-317 ERROR: Undefined symbol: .H5Dclose ld: 0711-317 ERROR: Undefined symbol: .H5Gunlink ld: 0711-317 ERROR: Undefined symbol: .H5DSdetach_scale ld: 0711-317 ERROR: Undefined symbol: .H5Gget_num_objs ld: 0711-317 ERROR: Undefined symbol: .H5Oget_info_by_idx ld: 0711-317 ERROR: Undefined symbol: .H5Lget_name_by_idx ld: 0711-317 ERROR: Undefined symbol: .H5DSattach_scale ld: 0711-317 ERROR: Undefined symbol: H5P_CLS_GROUP_CREATE_g ld: 0711-317 ERROR: Undefined symbol: .H5Pset_link_creation_order ld: 0711-317 ERROR: Undefined symbol: .H5Gcreate2 ld: 0711-317 ERROR: Undefined symbol: .H5Gclose ld: 0711-317 ERROR: Undefined symbol: .H5Gopen2 ld: 0711-317 ERROR: Undefined symbol: .H5Aget_num_attrs ld: 0711-317 ERROR: Undefined symbol: .H5Aopen_idx ld: 0711-317 ERROR: Undefined symbol: .H5Aget_name ld: 0711-317 ERROR: Undefined symbol: .H5Screate ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_INT_g ld: 0711-317 ERROR: Undefined symbol: .H5Acreate1 ld: 0711-317 ERROR: Undefined symbol: .H5Awrite ld: 0711-317 ERROR: Undefined symbol: .H5Aclose ld: 0711-317 ERROR: Undefined symbol: .H5Tenum_create ld: 0711-317 ERROR: Undefined symbol: .H5Tenum_insert ld: 0711-317 ERROR: Undefined symbol: .H5Tcommit1 ld: 0711-317 ERROR: Undefined symbol: .H5Tget_native_type ld: 0711-317 ERROR: Undefined symbol: .H5Tcreate ld: 0711-317 ERROR: Undefined symbol: .H5Tvlen_create ld: 0711-317 ERROR: Undefined symbol: .H5Tarray_create1 ld: 0711-317 ERROR: Undefined symbol: .H5Tinsert ld: 0711-317 ERROR: Undefined symbol: .H5Tset_size ld: 0711-317 ERROR: Undefined symbol: .H5Tset_strpad ld: 0711-317 ERROR: Undefined symbol: H5P_CLS_DATASET_ACCESS_g ld: 0711-317 ERROR: Undefined symbol: .H5Pset_layout ld: 0711-317 ERROR: Undefined symbol: .H5Pset_chunk_cache ld: 0711-317 ERROR: Undefined symbol: .H5Dcreate2 ld: 0711-317 ERROR: Undefined symbol: .H5Pset_fletcher32 ld: 0711-317 ERROR: Undefined symbol: .H5Pset_deflate ld: 0711-317 ERROR: Undefined symbol: .H5Pset_shuffle ld: 0711-317 ERROR: Undefined symbol: .H5Pset_fill_value ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I8BE_g ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_SCHAR_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I8LE_g ld: 0711-317 ERROR: Undefined symbol: H5T_C_S1_g ld: 0711-317 ERROR: Undefined symbol: .H5Tcopy ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I16BE_g ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_SHORT_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I16LE_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I32BE_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I32LE_g ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_FLOAT_g ld: 0711-317 ERROR: Undefined symbol: H5T_IEEE_F32LE_g ld: 0711-317 ERROR: Undefined symbol: H5T_IEEE_F64BE_g ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_DOUBLE_g ld: 0711-317 ERROR: Undefined symbol: H5T_IEEE_F64LE_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U8BE_g ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_UCHAR_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U8LE_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U16BE_g ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_USHORT_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U16LE_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U32BE_g ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_UINT_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U32LE_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I64BE_g ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_LLONG_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_I64LE_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U64BE_g ld: 0711-317 ERROR: Undefined symbol: H5T_NATIVE_ULLONG_g ld: 0711-317 ERROR: Undefined symbol: H5T_STD_U64LE_g ld: 0711-317 ERROR: Undefined symbol: .H5Gget_objinfo ld: 0711-317 ERROR: Undefined symbol: .H5Dget_space ld: 0711-317 ERROR: Undefined symbol: .H5Sget_simple_extent_type ld: 0711-317 ERROR: Undefined symbol: .H5Sget_simple_extent_dims ld: 0711-317 ERROR: Undefined symbol: .H5Dopen2 ld: 0711-317 ERROR: Undefined symbol: H5P_CLS_DATASET_XFER_g ld: 0711-317 ERROR: Undefined symbol: .H5Dread ld: 0711-317 ERROR: Undefined symbol: .H5Sselect_hyperslab ld: 0711-317 ERROR: Undefined symbol: .H5Dwrite ld: 0711-317 ERROR: Undefined symbol: .H5Adelete ld: 0711-317 ERROR: Undefined symbol: .H5Gmove ld: 0711-317 ERROR: Undefined symbol: .H5Tequal ld: 0711-317 ERROR: Undefined symbol: .H5Sget_simple_extent_ndims ld: 0711-317 ERROR: Undefined symbol: .H5Fclose ld: 0711-317 ERROR: Undefined symbol: .H5Fflush ld: 0711-317 ERROR: Undefined symbol: .H5Eset_auto1 ld: 0711-317 ERROR: Undefined symbol: .H5check_version ld: 0711-317 ERROR: Undefined symbol: H5P_CLS_FILE_ACCESS_g ld: 0711-317 ERROR: Undefined symbol: .H5Pset_fclose_degree ld: 0711-317 ERROR: Undefined symbol: .H5Pset_cache ld: 0711-317 ERROR: Undefined symbol: .H5Fopen ld: 0711-317 ERROR: Undefined symbol: .H5Dget_access_plist ld: 0711-317 ERROR: Undefined symbol: .H5DSis_scale ld: 0711-317 ERROR: Undefined symbol: .H5DSget_num_scales ld: 0711-317 ERROR: Undefined symbol: .H5Pget_chunk_cache ld: 0711-317 ERROR: Undefined symbol: .H5Dget_create_plist ld: 0711-317 ERROR: Undefined symbol: .H5Pget_layout ld: 0711-317 ERROR: Undefined symbol: .H5Pget_nfilters ld: 0711-317 ERROR: Undefined symbol: .H5Pget_filter2 ld: 0711-317 ERROR: Undefined symbol: .H5Pfill_value_defined ld: 0711-317 ERROR: Undefined symbol: .H5Pget_fill_value ld: 0711-317 ERROR: Undefined symbol: .H5DSiterate_scales ld: 0711-317 ERROR: Undefined symbol: .H5Pget_chunk ld: 0711-317 ERROR: Undefined symbol: .H5Topen2 ld: 0711-317 ERROR: Undefined symbol: .H5Tget_size ld: 0711-317 ERROR: Undefined symbol: .H5Tget_class ld: 0711-317 ERROR: Undefined symbol: .H5Tget_nmembers ld: 0711-317 ERROR: Undefined symbol: .H5Tget_member_name ld: 0711-317 ERROR: Undefined symbol: .H5Tget_member_value ld: 0711-317 ERROR: Undefined symbol: .H5Tget_member_type ld: 0711-317 ERROR: Undefined symbol: .H5Tget_member_offset ld: 0711-317 ERROR: Undefined symbol: .H5Tget_array_ndims ld: 0711-317 ERROR: Undefined symbol: .H5Tget_array_dims1 ld: 0711-317 ERROR: Undefined symbol: .H5Tget_super ld: 0711-317 ERROR: Undefined symbol: .H5Tis_variable_str ld: 0711-317 ERROR: Undefined symbol: .H5Aget_type ld: 0711-317 ERROR: Undefined symbol: .H5Aget_space ld: 0711-317 ERROR: Undefined symbol: .H5Sget_simple_extent_npoints ld: 0711-317 ERROR: Undefined symbol: .H5Aread ld: 0711-317 ERROR: Undefined symbol: .H5Dget_type ld: 0711-317 ERROR: Undefined symbol: .H5Tget_order ld: 0711-317 ERROR: Undefined symbol: .H5Aopen_name ld: 0711-317 ERROR: Undefined symbol: .H5DSget_scale_name ld: 0711-317 ERROR: Undefined symbol: .H5Pset_libver_bounds ld: 0711-317 ERROR: Undefined symbol: H5P_CLS_FILE_CREATE_g ld: 0711-317 ERROR: Undefined symbol: .H5Fcreate ld: 0711-317 ERROR: Undefined symbol: .H5close ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more information. make: 1254-004 The error code from the last command is 8. Stop. make: 1254-004 The error code from the last command is 1. Stop. make: 1254-004 The error code from the last command is 2. Stop . How to resolve this issue. Best regards, Jayant
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