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Aha! That's something I'd not explicitly tried. Thank you! gerry On Mon, Aug 26, 2013 at 4:01 PM, Orion Poplawski <orion@xxxxxxxxxxxxx>wrote: > On 08/26/2013 07:21 AM, Stefan Mauerberger wrote: > >> Hello there, >> >> first of all, building serial netCDF on Ubuntu 12.10 works fine. >> Therefore I installed the packages libhdf5-dev and libhdf5-7 1.8.8-9. >> All tests pass through. >> >> Well, in INSTALL.cmake lines 72 and 90 are wrong. They should better >> read as >> cmake ./ -DCMAKE_INSTALL_PREFIX=$HOME/**local ... >> instead of >> ./cmake >> In addition between lines 72-73 and 90-91 a 'make' is missing. >> >> In contrast to serial netCDF, I can not build netCDF with parallel I/O >> support. Both CMake and ./configure complain that there is no hdf5.h >> header file. >> >> Let me explain first what I have done so far. The packages libhdf5-dev >> and libhdf5-7 got replaced by there MPI counterparts. That are >> libhdf5-openmpi-dev and libhdf5-openmpi-7 also version 1.8.8-9. >> After that I tried to run >> CC=mpicc.openmpi cmake . -DENABLE_PARALLEL=ON >> -DCMAKE_INSTALL_PREFIX=$HOME/**local/ >> Unfortunately the output is: >> >>> .... >>> -- Found CURL: /usr/lib/x86_64-linux-gnu/**libcurl.so (found version >>> "7.27.0") >>> CMake Error at CMakeLists.txt:572 (CHECK_LIBRARY_EXISTS): >>> CHECK_LIBRARY_EXISTS Macro invoked with incorrect arguments for >>> macro >>> named: CHECK_LIBRARY_EXISTS >>> >>> >>> CMake Error at CMakeLists.txt:576 (CHECK_LIBRARY_EXISTS): >>> CHECK_LIBRARY_EXISTS Macro invoked with incorrect arguments for >>> macro >>> named: CHECK_LIBRARY_EXISTS >>> >>> >>> -- Cannot find HDF5 library built with parallel support. Disabling >>> parallel build. >>> -- Looking for math.h >>> -- Looking for math.h - found >>> .... >>> >> Well, HDF5 with parallel IO support is installed. Why doesn't cmake >> (2.8.9) as well as the configure script find it? Any ideas? >> > > I have to explicitly give the location of the parallel hdf5 library, e.g.: > > -DENABLE_PARALLEL=ON > -DHDF5_LIB=/usr/lib64/openmpi/**lib/libhdf5.so > -DHDF5_HL_LIB=/usr/lib64/**openmpi/lib/libhdf5_hl.so > -DHDF5_INCLUDE_DIR=/usr/**include/openmpi-x86_64 > > > > -- > Orion Poplawski > Technical Manager 303-415-9701 x222 > NWRA, Boulder/CoRA Office FAX: 303-415-9702 > 3380 Mitchell Lane orion@xxxxxxxx > Boulder, CO 80301 http://www.nwra.com > > > ______________________________**_________________ > netcdfgroup mailing list > netcdfgroup@xxxxxxxxxxxxxxxx > For list information or to unsubscribe, visit: > http://www.unidata.ucar.edu/**mailing_lists/<http://www.unidata.ucar.edu/mailing_lists/> > -- Gerry Creager NSSL/CIMMS 405.325.6371 ++++++++++++++++++++++ “Big whorls have little whorls, That feed on their velocity; And little whorls have lesser whorls, And so on to viscosity.” Lewis Fry Richardson (1881-1953)
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