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NOTICE: This version of the NSF Unidata web site (archive.unidata.ucar.edu) is no longer being updated.
Current content can be found at unidata.ucar.edu.
To learn about what's going on, see About the Archive Site.
Hi all,I am using netcdf within the BioFormats project [1]. I am trying to read a dataset (generated with HDF5) with properties:
No. of Dimensions: 1 Dimensions Size: 663 Max dimension size: Unlimited Data Type: String, length = variable Chunking: 55 Compression: GZIP: level 4, Storage level allocation time: IncrementalWhen I want to read the data I get following error. If the same dataset is not GZIP compressed, it works...
java.lang.IllegalStateException
at ucar.nc2.iosp.IospHelper.readData(IospHelper.java:396)
at ucar.nc2.iosp.IospHelper.readDataFill(IospHelper.java:292)
at ucar.nc2.iosp.hdf5.H5iosp.readData(H5iosp.java:163)
at ucar.nc2.iosp.hdf5.H5iosp.readData(H5iosp.java:141)
at ucar.nc2.NetcdfFile.readData(NetcdfFile.java:1957)
at ucar.nc2.Variable.reallyRead(Variable.java:841)
at ucar.nc2.Variable._read(Variable.java:813)
at ucar.nc2.Variable.read(Variable.java:691)
at
loci.formats.services.NetCDFServiceImpl.getArray(NetCDFServiceImpl.java:168)
at
loci.formats.services.NetCDFServiceImpl.getVariableValue(NetCDFServiceImpl.java:150)
at loci.formats.in.CellH5Reader.parseROIs(CellH5Reader.java:453)
Is reading of VLen data + Compression possible with NetCDF?
Thanks a lot!
Cheers,
Christoph
[1]
http://www.openmicroscopy.org/site/support/bio-formats5/developers/java-library.html
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