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NOTICE: This version of the NSF Unidata web site (archive.unidata.ucar.edu) is no longer being updated.
Current content can be found at unidata.ucar.edu.
To learn about what's going on, see About the Archive Site.
Dear netcdfgroup:
Please ignore my first E-mail, this is the latest situation.
I recently upgraded my system to OS X 10.10, and intel compiler to a
new 2015 version (The only compiler I can use at this platform).
Then I found I cannot use netcdf library for reading file anymore.
I can sucessfully install the latest netcdf (netcdf-4.3.2 with
netcdf-fortran-4.4.1) or an older version netcdf3.6.3 (both of them pass make
check install).
But when I run my fortran code (The binary exe is successfully
compiled and linked) and read netcdf file as usual (good on older OS X 10.9 or
another AIX system),
It always throws "Illegal instruction: 4" and stops. But I can
successfully write a netcdf file.
Then I use gdb to debug it, the info follows:
before ! just a statement for checking
Catchpoint -2 (signal SIGSEGV), 0x0000000100002dff in file_mod::get_gs3d
(varname=..., ncid=65536, var=..., nlon=271,
nlat=271, nlev=149, ntim=1, .tmp.VARNAME.len_V$44=6) at file_mod.F90:65
65 print*,"ok"
How can I successfully read the netcdf file again?
Regards
Cheung
At 2014-11-26 17:00:33, "Cheung" <zuibeidemei@xxxxxxx> wrote:
Dear netcdfgroup:
I recently upgraded my system to OS X 10.10, and intel compiler to a
new 2015 version (The only compiler I can use at this platform).
Then I found I cannot use netcdf anymore.
For an old netcdf version, 3.6.3, I can sucessffully install it with
this new combination,
but When I run my code as usual, the program will throw "Illegal
instruction: 4" and stops.
For a latest version, netcdf-4.3.2 and netcdf-fortran-4.4.1, I can
sucessffully install the C library,
but fail to install the fortran lib. I did it as the instruction
online ( http://www.unidata.ucar.edu/netcdf/docs/netcdf-fortran-install.html).
It stops at the "make check install" with the following errors:
Please give a help.
--
Regards
Cheung
Making check in fortran
/Applications/Xcode.app/Contents/Developer/usr/bin/make check-am
make[2]: Nothing to be done for `check-am'.
Making check in nf_test
/Applications/Xcode.app/Contents/Developer/usr/bin/make nf_test tst_f77_v2
ftest tst_f90
ifort -I../fortran -I../fortran -g -c -o f03lib_f_interfaces.o
f03lib_f_interfaces.f90
ifort -DHAVE_CONFIG_H -I. -I.. -I../libsrc
-I/softwares/intel/netcdf-4.3.2/include/ -I../fortran -I../fortran -g -c -o
test_get.o test_get.F
ifort -DHAVE_CONFIG_H -I. -I.. -I../libsrc
-I/softwares/intel/netcdf-4.3.2/include/ -I../fortran -I../fortran -g -c -o
test_put.o test_put.F
ifort -DHAVE_CONFIG_H -I. -I.. -I../libsrc
-I/softwares/intel/netcdf-4.3.2/include/ -I../fortran -I../fortran -g -c -o
nf_error.o nf_error.F
ifort -DHAVE_CONFIG_H -I. -I.. -I../libsrc
-I/softwares/intel/netcdf-4.3.2/include/ -I../fortran -I../fortran -g -c -o
nf_test.o nf_test.F
ifort -DHAVE_CONFIG_H -I. -I.. -I../libsrc
-I/softwares/intel/netcdf-4.3.2/include/ -I../fortran -I../fortran -g -c -o
test_read.o test_read.F
ifort -DHAVE_CONFIG_H -I. -I.. -I../libsrc
-I/softwares/intel/netcdf-4.3.2/include/ -I../fortran -I../fortran -g -c -o
test_write.o test_write.F
ifort -DHAVE_CONFIG_H -I. -I.. -I../libsrc
-I/softwares/intel/netcdf-4.3.2/include/ -I../fortran -I../fortran -g -c -o
util.o util.F
depbase=`echo f03lib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
icc -DHAVE_CONFIG_H -I. -I.. -I../libsrc
-I/softwares/intel/netcdf-4.3.2/include/ -g -O2 -DLONGLONG_IS_LONG -MT
f03lib.o -MD -MP -MF $depbase.Tpo -c -o f03lib.o f03lib.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ../libtool --tag=F77 --mode=link ifort -I../fortran -I../fortran
-g -L/softwares/intel/netcdf-4.3.2/lib/ -o nf_test f03lib_f_interfaces.o
test_get.o test_put.o nf_error.o nf_test.o test_read.o test_write.o util.o
f03lib.o ../fortran/libnetcdff.la -lnetcdf
libtool: link: ifort -I../fortran -I../fortran -g -o .libs/nf_test
f03lib_f_interfaces.o test_get.o test_put.o nf_error.o nf_test.o test_read.o
test_write.o util.o f03lib.o -L/softwares/intel/netcdf-4.3.2/lib/
../fortran/.libs/libnetcdff.dylib
/softwares/intel/netcdf-4.3.2/lib/libnetcdf.dylib -lm -lz -lcurl
ifort -DHAVE_CONFIG_H -I. -I.. -I../libsrc
-I/softwares/intel/netcdf-4.3.2/include/ -I../fortran -I../fortran -g -c -o
tst_f77_v2.o tst_f77_v2.F
/bin/sh ../libtool --tag=F77 --mode=link ifort -I../fortran -I../fortran
-g -L/softwares/intel/netcdf-4.3.2/lib/ -o tst_f77_v2 tst_f77_v2.o
../fortran/libnetcdff.la -lnetcdf
libtool: link: ifort -I../fortran -I../fortran -g -o .libs/tst_f77_v2
tst_f77_v2.o -L/softwares/intel/netcdf-4.3.2/lib/
../fortran/.libs/libnetcdff.dylib
/softwares/intel/netcdf-4.3.2/lib/libnetcdf.dylib -lm -lz -lcurl
ifort -DHAVE_CONFIG_H -I. -I.. -I../libsrc
-I/softwares/intel/netcdf-4.3.2/include/ -I../fortran -I../fortran -g -c -o
ftest.o ftest.F
/bin/sh ../libtool --tag=F77 --mode=link ifort -I../fortran -I../fortran
-g -L/softwares/intel/netcdf-4.3.2/lib/ -o ftest ftest.o f03lib.o
../fortran/libnetcdff.la -lnetcdf
libtool: link: ifort -I../fortran -I../fortran -g -o .libs/ftest ftest.o
f03lib.o -L/softwares/intel/netcdf-4.3.2/lib/
../fortran/.libs/libnetcdff.dylib
/softwares/intel/netcdf-4.3.2/lib/libnetcdf.dylib -lm -lz -lcurl
ifort -I../fortran -I../fortran -g -c -o tst_f90.o tst_f90.f90
/bin/sh ../libtool --tag=FC --mode=link ifort -I../fortran -I../fortran -g
-L/softwares/intel/netcdf-4.3.2/lib/ -o tst_f90 tst_f90.o
../fortran/libnetcdff.la -lnetcdf
libtool: link: ifort -I../fortran -I../fortran -g -o .libs/tst_f90 tst_f90.o
-L/softwares/intel/netcdf-4.3.2/lib/ ../fortran/.libs/libnetcdff.dylib
/softwares/intel/netcdf-4.3.2/lib/libnetcdf.dylib -lm -lz -lcurl
/Applications/Xcode.app/Contents/Developer/usr/bin/make check-TESTS
../test-driver: line 107: 79632 Trace/BPT trap: 5 "$@" > $log_file 2>&1
FAIL: nf_test
PASS: create_fills.sh
../test-driver: line 107: 79659 Trace/BPT trap: 5 "$@" > $log_file 2>&1
FAIL: tst_f77_v2
../test-driver: line 107: 79678 Trace/BPT trap: 5 "$@" > $log_file 2>&1
FAIL: ftest
../test-driver: line 107: 79697 Trace/BPT trap: 5 "$@" > $log_file 2>&1
FAIL: tst_f90
make[4]: Nothing to be done for `all'.
============================================================================
Testsuite summary for netCDF-Fortran 4.4.1
============================================================================
# TOTAL: 5
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 4
# XPASS: 0
# ERROR: 0
============================================================================
See nf_test/test-suite.log
Please report to support-netcdf@xxxxxxxxxxxxxxxx
============================================================================
make[3]: *** [test-suite.log] Error 1
make[2]: *** [check-TESTS] Error 2
make[1]: *** [check-am] Error 2
make: *** [check-recursive] Error 1
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