NOTICE: This version of the NSF Unidata web site (archive.unidata.ucar.edu) is no longer being updated.
Current content can be found at unidata.ucar.edu.

To learn about what's going on, see About the Archive Site.

Re: [netcdfgroup] [EXTERNAL] file sizes: netCDF classic vs. netCDF-4

  • To: "Sjaardema, Gregory D" <gdsjaar@xxxxxxxxxx>
  • Subject: Re: [netcdfgroup] [EXTERNAL] file sizes: netCDF classic vs. netCDF-4
  • From: Chris Barker <chris.barker@xxxxxxxx>
  • Date: Wed, 4 Feb 2015 14:32:25 -0800
On Wed, Feb 4, 2015 at 2:25 PM, Sjaardema, Gregory D <gdsjaar@xxxxxxxxxx>
wrote:

> It isn¹t usually a constant file size multiplier, it is typically an
> offset in file size.  In other words, typically the file will be somewhat
> larger for the hdf5-based version (with no compression) than a
> corresponding netcdf-based classic file, but the size differential will be
> smaller as the overall file sizes increase.
>

unless there are poor settings for chunk sizes -- the defaults used to be
horrible for 1-d arrays (or with arrays with one or more very small
dimension) -- though I think recent versions fixed this. Might be worth
checking out though.

-CHB






> Note that with the netcdf4 hdf5-based file, you can also enable
> compression with the "-d #² and -s options.  Œ#¹ can rance from 1 to 9,
> but values of 1 or 2 along with the shuffle (-s) option typically give
> good results.
>
> ..Greg
>
> On 2/4/15, 3:16 PM, "Nico Schlömer" <nico.schloemer@xxxxxxxxx> wrote:
>
> >Hi all,
> >
> >When converting classical netCDF files to their modern format (compare
> >the thread starting at [1]) I noticed that the file size blows up
> >considerably, e.g.
> >```
> >$ du -sh pacman-classical.e
> >40K pacman-classical.e
> >$ nccopy -k hdf5 pacman-classical.e pacman.e
> >$ du -sh pacman.e
> >4.1M pacman.e
> >```
> >with `pacman-classical.e` from [2]. I'm not too worried about this
> >now, but is this something you would expect?
> >
> >Cheers,
> >Nico
> >
> >
> >[1]
> >
> http://www.unidata.ucar.edu/mailing_lists/archives/netcdfgroup/2015/msg000
> >19.html
> >[2] http://win.ua.ac.be/~nschloe/other/pacman.e
> >
> >_______________________________________________
> >netcdfgroup mailing list
> >netcdfgroup@xxxxxxxxxxxxxxxx
> >For list information or to unsubscribe,  visit:
> >http://www.unidata.ucar.edu/mailing_lists/
>
> _______________________________________________
> netcdfgroup mailing list
> netcdfgroup@xxxxxxxxxxxxxxxx
> For list information or to unsubscribe,  visit:
> http://www.unidata.ucar.edu/mailing_lists/
>



-- 

Christopher Barker, Ph.D.
Oceanographer

Emergency Response Division
NOAA/NOS/OR&R            (206) 526-6959   voice
7600 Sand Point Way NE   (206) 526-6329   fax
Seattle, WA  98115       (206) 526-6317   main reception

Chris.Barker@xxxxxxxx
  • 2015 messages navigation, sorted by:
    1. Thread
    2. Subject
    3. Author
    4. Date
    5. ↑ Table Of Contents
  • Search the netcdfgroup archives: