Re: [netcdfgroup] Regarding multiple definition of ncvar*

• To: Puneet Singh <singh.punit1990@xxxxxxxxx>, "netcdfgroup@xxxxxxxxxxxxxxxx" <netcdfgroup@xxxxxxxxxxxxxxxx>
• Subject: Re: [netcdfgroup] Regarding multiple definition of ncvar*
• From: Kent Yang <myang6@xxxxxxxxxxxx>
• Date: Fri, 25 Mar 2016 14:25:35 +0000
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You should build HDF4 with ./configure  --disable-netcdf to avoid the multiple 
definition of netCDF API error.
By the default configuration, HDF4 also supports the netCDF-3 APIs.

Kent

From: netcdfgroup-bounces@xxxxxxxxxxxxxxxx 
[mailto:netcdfgroup-bounces@xxxxxxxxxxxxxxxx] On Behalf Of Puneet Singh
Sent: Friday, March 25, 2016 5:30 AM
To: netcdfgroup@xxxxxxxxxxxxxxxx
Subject: [netcdfgroup] Regarding multiple definition of ncvar*

Dear Sir,
I am trying to compile netcdf-4.3.3.1 on centos 6.5 and i am facing following 
error with intel as well as gnu compilers.My configure line was:
CC="icc" CFLAGS="-fPIC" LDFLAGS="-L$SZIP_LIBRARY -L$JPEG_LIBRARY" LIBS="-ljpeg 
-lsz" ./configure 
--prefix="/home/apps/NETCDF/c/4.3.3.1/intel<http://4.3.3.1/intel>" 
--enable-hdf4 --enable-netcdf-4  --with-szlib="$SZIP_ROOT" 
--with-zlib="$ZLIB_ROOT" --with-hdf5="$HDF5_ROOT"  --enable-shared

 libtool: link: gcc -shared  -fPIC -DPIC  .libs/libnetcdf_la-stub.o  
-Wl,--whole-archive ../libdispatch/.libs/libnetcdf2.a 
../libdispatch/.libs/libdispatch.a ../libsrc/.libs/libnetcdf3.a 
../libdap2/.libs/libdap2.a ../oc2/.libs/liboc.a ../libsrc4/.libs/libnetcdf4.a 
-Wl,--no-whole-archive  -Wl,-rpath -Wl,/home/apps/HDF/5/1.8.16/intel/lib 
-Wl,-rpath -Wl,/home/apps/SZIP/2.1/gnu/lib -Wl,-rpath 
-Wl,/home/apps/HDF/5/1.8.16/intel/lib -Wl,-rpath 
-Wl,/home/apps/SZIP/2.1/gnu/lib -L/home/apps/SZIP/2.1/gnu/lib 
-L/home/apps/LIBJPEG/6b/gnu/lib -L/home/apps/ZLIB/1.2.8/gnu/lib -lrt -lz 
/home/apps/HDF/4/4.2.11/intel/lib/libmfhdf.a 
/home/apps/HDF/4/4.2.11/intel/lib/libdf.a 
/home/apps/HDF/5/1.8.16/intel/lib/libhdf5_hl.so 
/home/apps/HDF/5/1.8.16/intel/lib/libhdf5.so -ldl -lm -lcurl -ljpeg 
/home/apps/SZIP/2.1/gnu/lib/libsz.so    -Wl,-soname -Wl,libnetcdf.so.7 -o 
.libs/libnetcdf.so.7.2.0
/home/apps/HDF/4/4.2.11/intel/lib/libmfhdf.a(putget.o): In function `ncvarput1':
putget.c:(.text+0x110): multiple definition of `ncvarput1'
../libdispatch/.libs/libnetcdf2.a(libnetcdf2_la-dv2i.o):dv2i.c:(.text+0x1050): 
first defined here
/home/apps/HDF/4/4.2.11/intel/lib/libmfhdf.a(putget.o): In function `ncvarget1':
putget.c:(.text+0x810): multiple definition of `ncvarget1'
../libdispatch/.libs/libnetcdf2.a(libnetcdf2_la-dv2i.o):dv2i.c:(.text+0x10c4): 
first defined here
/home/apps/HDF/4/4.2.11/intel/lib/libmfhdf.a(putget.o): In function `ncvarput':
putget.c:(.text+0xef0): multiple definition of `ncvarput'
../libdispatch/.libs/libnetcdf2.a(libnetcdf2_la-dv2i.o):dv2i.c:(.text+0x1138): 
first defined here
/home/apps/HDF/4/4.2.11/intel/lib/libmfhdf.a(putget.o): In function `ncvarget':
putget.c:(.text+0x39c0): multiple definition of `ncvarget'
../libdispatch/.libs/libnetcdf2.a(libnetcdf2_la-dv2i.o):dv2i.c:(.text+0x11bf): 
first defined here
/home/apps/HDF/4/4.2.11/intel/lib/libmfhdf.a(putget.o): In function `ncrecinq':
putget.c:(.text+0x3c90): multiple definition of `ncrecinq'
../libdispatch/.libs/libnetcdf2.a(libnetcdf2_la-dv2i.o):dv2i.c:(.text+0x1966): 
first defined here
/home/apps/HDF/4/4.2.11/intel/lib/libmfhdf.a(putget.o): In function `ncrecput':
putget.c:(.text+0x3f70): multiple definition of `ncrecput'
../libdispatch/.libs/libnetcdf2.a(libnetcdf2_la-dv2i.o):dv2i.c:(.text+0x1ae2): 
first defined here
/home/apps/HDF/4/4.2.11/intel/lib/libmfhdf.a(putget.o): In function `ncrecget':
putget.c:(.text+0x4ab0): multiple definition of `ncrecget'
../libdispatch/.libs/libnetcdf2.a(libnetcdf2_la-dv2i.o):dv2i.c:(.text+0x1a81): 
first defined here
/home/apps/HDF/4/4.2.11/intel/lib/libmfhdf.a(putgetg.o): In function 
`ncvarputg':
putgetg.c:(.text+0x0): multiple definition of `ncvarputg'
I wish to compile netcdf with hdf4+5 support. Any help/hint/pointers will be 
very useful. Eagerly awaiting your replies.

Thanks & Regards,
Puneet Singh

• References:
  • [netcdfgroup] Regarding multiple definition of ncvar*
    • From: Puneet Singh