Re: [netcdfgroup] HD5 library error

• To: Mahmood Naderan <mahmood.nt@xxxxxxxxx>
• Subject: Re: [netcdfgroup] HD5 library error
• From: Nick Papior <nickpapior@xxxxxxxxx>
• Date: Thu, 21 Jul 2016 15:22:23 +0200

Probably because you need to explicitly set the hdf5 library, the sz and
the z libraries.

If you attach the config.log it is easier to figure out.

2016-07-21 15:17 GMT+02:00 Mahmood Naderan <mahmood.nt@xxxxxxxxx>:

> Hi,
> There are several pages about this error
>
> configure: error: Can't find or link to the hdf5 library. Use
> --disable-netcdf-4, or see config.log for errors.
>
>
> However, I am sure that hd5 library is OK. I downloaded the package and
> gave the path to the configure script.
>
> root@cluster:~# cd /export/apps/computer/netcdf-4.4.1
> root@cluster:netcdf-4.4.1# ls
> ../hdf5-1.8.17-linux-centos6-x86_64-gcc447-shared/
> bin  COPYING  include  lib  README  RELEASE.txt  share
> root@cluster:netcdf-4.4.1# ls
> ../hdf5-1.8.17-linux-centos6-x86_64-gcc447-shared/lib
> libhdf5.a              libhdf5_fortran.so.10.0.3
> libhdf5hl_fortran.so.10      libhdf5.so.10.2.0
> libhdf5_cpp.a          libhdf5_hl.a
> libhdf5hl_fortran.so.10.0.3  libsz.so
> libhdf5_cpp.so         libhdf5_hl_cpp.a
> libhdf5_hl.so                libsz.so.2
> libhdf5_cpp.so.12      libhdf5_hl_cpp.so
> libhdf5_hl.so.10             libsz.so.2.0.0
> libhdf5_cpp.so.12.0.0  libhdf5_hl_cpp.so.11
> libhdf5_hl.so.10.1.0         libz.so
> libhdf5_fortran.a      libhdf5_hl_cpp.so.11.1.0
> libhdf5.settings             libz.so.1
> libhdf5_fortran.so     libhdf5hl_fortran.a
> libhdf5.so                   libz.so.1.2.5
> libhdf5_fortran.so.10  libhdf5hl_fortran.so       libhdf5.so.10
>
> root@cluster:netcdf-4.4.1# echo $LD_LIBRARY_PATH
> /export/apps/computer/hdf5-1.8.17-linux-centos6-x86_64-gcc447-shared/lib
> root@cluster:netcdf-4.4.1# ./configure
> --with-hd5=/export/apps/computer/hdf5-1.8.17-linux-centos6-x86_64-gcc447-shared
> ...
> ...
> checking for library containing H5Fflush... no
> configure: error: Can't find or link to the hdf5 library. Use
> --disable-netcdf-4, or see config.log for errors.
>
>
>
>
> I really don't understand why it is still giving me the error.
> Thanks for any suggestion.
>
>
> Regards,
> Mahmood
>
>
>
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-- 
Kind regards Nick

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    • From: Mahmood Naderan