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Good idea: lldb Larry Baker US Geological Survey 650-329-5608 baker@xxxxxxxx > On 3 May 2017, at 3:35:19 PM, dmh@xxxxxxxx wrote: > > Is there a osx equivalent of gdb? If so, you could > probably run the ncdump command using that debugger > and it will probably catch the seg fault. This would > allow some idea of where the failure is occurring. > =Dennis Heimbigner > Unidata > > On 5/3/2017 4:25 PM, Capehart, William J wrote: >> To be desperate ;-P is there a way to test things with just the libcurl to >> see where the problem is? I am assuming that most people are getting >> satisfaction with the resident version with Sierra. I'm really on my last >> leg here. I'm not even getting core files with my seg faults on ncdump or >> my simple Fortran program inbuilt to test it... both run just fine on >> Centos . >> Sent from my iPhone >>> On May 3, 2017, at 15:04, "dmh@xxxxxxxx" <dmh@xxxxxxxx> wrote: >>> >>> To be pedantic, ncdump (via the netcdf-c library) uses libcurl. >>> =Dennis Heimbigner >>> Unidata >>> >>>> On 5/3/2017 2:31 PM, Roy Mendelssohn - NOAA Federal wrote: >>>> Hmm - I may be wrong but i thought the ncdump for a remote file just uses >>>> curl to get the .das and .dds and forms the .cdl response from those. >>>> Have you tried a different server? >>>> Say, >>>> ncdump -h >>>> http://coastwatch.pfeg.noaa.gov/erddap/griddap/jplAquariusSSSMonthlyV4 >>>> -Roy >>>>> On May 3, 2017, at 1:25 PM, Capehart, William J >>>>> <William.Capehart@xxxxxxxxx> wrote: >>>>> >>>>> Roy for the curl I get the followingf >>>>> >>>>> % curl -v http://test.opendap.org/opendap/data/nc/3fnoc.nc.das >>>>> * Trying 52.44.0.41... >>>>> * TCP_NODELAY set >>>>> * Connected to test.opendap.org (52.44.0.41) port 80 (#0) >>>>>> GET /opendap/data/nc/3fnoc.nc.das HTTP/1.1 >>>>>> Host: test.opendap.org >>>>>> User-Agent: curl/7.51.0 >>>>>> Accept: */* >>>>>> >>>>> < HTTP/1.1 200 OK >>>>> < Date: Wed, 03 May 2017 20:22:21 GMT >>>>> < X-FRAME-OPTIONS: DENY >>>>> < Last-Modified: Tue, 10 Jan 2006 18:32:26 GMT >>>>> < Set-Cookie: JSESSIONID=63E4296077ED5DBE9CFE2C49B169D4ED; Path=/opendap; >>>>> HttpOnly >>>>> < XDODS-Server: dods/3.2 >>>>> < XOPeNDAP-Server: bes/3.17.4, csv_handler/1.1.6, dap-server/ascii/4.1.5, >>>>> dap-server/usage/4.2.6, dap-server/www/4.1.5, dapreader_module/0.0.1, >>>>> fileout_gdal/0.10.1, fileout_json/1.0.6, fileout_netcdf/1.4.3, >>>>> fits_handler/1.0.18, freeform_handler/3.9.6, functions/1.1.0, >>>>> gateway_module/1.1.9, gdal_handler/1.0.7, hdf4_handler/3.12.3, >>>>> hdf5_handler/2.3.5, libdap/3.18.3, ncml_moddule/1.4.4, >>>>> netcdf_handler/3.11.6, w10n_handler/1.0.6, xml_data_handler/1.1.2 >>>>> < X-DAP: 3.2 >>>>> < Content-Description: dods_das >>>>> < Content-Type: text/plain >>>>> < Connection: close >>>>> < Transfer-Encoding: chunked >>>>> < >>>>> Attributes { >>>>> u { >>>>> String units "meter per second"; >>>>> String long_name "Vector wind eastward component"; >>>>> String missing_value "-32767"; >>>>> String scale_factor "0.005"; >>>>> } >>>>> v { >>>>> String units "meter per second"; >>>>> String long_name "Vector wind northward component"; >>>>> String missing_value "-32767"; >>>>> String scale_factor "0.005"; >>>>> } >>>>> lat { >>>>> String units "degree North"; >>>>> } >>>>> lon { >>>>> String units "degree East"; >>>>> } >>>>> time { >>>>> String units "hours from base_time"; >>>>> } >>>>> NC_GLOBAL { >>>>> String base_time "88-245-00:00:00"; >>>>> String title " FNOC UV wind components from 1988-245 to 1988-247."; >>>>> } >>>>> DODS_EXTRA { >>>>> String Unlimited_Dimension "time_a"; >>>>> } >>>>> } >>>>> * Curl_http_done: called premature == 0 >>>>> * Closing connection 0 >>>>> >>>>> >>>>> ------------------------------------------------ >>>>> Bill Capehart <William.Capehart@xxxxxxxxx> >>>>> Atmospheric and Environmental Sciences Program Coordinator >>>>> Civil and Environmental Engineering >>>>> 201 Mineral Industries Building >>>>> South Dakota School of Mines and Technology >>>>> 501 East St Joseph Street >>>>> Rapid City, SD 57701-3995 >>>>> Ph: +1-605-394-1994 Mobile: +1-605-484-4692 >>>>> >>>>> On 5/3/17, 14:19 MDT, "Roy Mendelssohn - NOAA Federal" >>>>> <roy.mendelssohn@xxxxxxxx> wrote: >>>>> >>>>> More specifically, what do you get when you give: >>>>> >>>>> curl -v http://test.opendap.org/opendap/data/nc/3fnoc.nc.das >>>>> >>>>> >>>>> -Roy >>>>> >>>>> >>>>>> On May 3, 2017, at 1:01 PM, Roy Mendelssohn - NOAA Federal >>>>>> <roy.mendelssohn@xxxxxxxx> wrote: >>>>>> >>>>>> What happens if you just do a curl to get the address but ask for the >>>>>> .das instead, and see if your curl and access the site. >>>>>> >>>>>> -Roy >>>>>> >>>>>>> On May 3, 2017, at 12:57 PM, Capehart, William J >>>>>>> <William.Capehart@xxxxxxxxx> wrote: >>>>>>> >>>>>>> Did that with both fink and homebrew including compiling all from >>>>>>> source each time. Still no traction. :-( >>>>>>> >>>>>>> ------------------------------------------------ >>>>>>> Bill Capehart <William.Capehart@xxxxxxxxx> >>>>>>> Atmospheric and Environmental Sciences Program Coordinator >>>>>>> Civil and Environmental Engineering >>>>>>> 201 Mineral Industries Building >>>>>>> South Dakota School of Mines and Technology >>>>>>> 501 East St Joseph Street >>>>>>> Rapid City, SD 57701-3995 >>>>>>> Ph: +1-605-394-1994 Mobile: +1-605-484-4692 >>>>>>> >>>>>>> On 5/3/17, 08:06 MDT, "Roy Mendelssohn - NOAA Federal" >>>>>>> <roy.mendelssohn@xxxxxxxx> wrote: >>>>>>> >>>>>>> try installing the fink curl. >>>>>>> >>>>>>> -roy >>>>>>> >>>>>>>> On May 3, 2017, at 6:47 AM, Capehart, William J >>>>>>>> <William.Capehart@xxxxxxxxx> wrote: >>>>>>>> >>>>>>>> I am attaching my gist of the build >>>>>>>> >>>>>>>> https://gist.github.com/anonymous/4db828fcd4384c7883a8687147ced1f7 >>>>>>>> >>>>>>>> The C tst is 3.make >>>>>>>> The C++4 Test is 7.make >>>>>>>> The Fortran Test is 11.make >>>>>>>> The C++ test is 16.make >>>>>>>> >>>>>>>> Hi Sean: And the output of my nc-config –alll >>>>>>>> >>>>>>>> https://gist.github.com/733ad6330523a83cee204f9f7f34c061 >>>>>>>> >>>>>>>> >>>>>>>> The curl version on my mac (10.12.4) is the on-board version which I >>>>>>>> presume is what I need >>>>>>>> >>>>>>>> % curl --version >>>>>>>> curl 7.51.0 (x86_64-apple-darwin16.0) libcurl/7.51.0 SecureTransport >>>>>>>> zlib/1.2.8 >>>>>>>> Protocols: dict file ftp ftps gopher http https imap imaps ldap ldaps >>>>>>>> pop3 pop3s rtsp smb smbs smtp smtps telnet tftp >>>>>>>> Features: AsynchDNS IPv6 Largefile GSS-API Kerberos SPNEGO NTLM >>>>>>>> NTLM_WB SSL libz UnixSockets >>>>>>>> >>>>>>>> And curl -Oing my the target file produces the following >>>>>>>> >>>>>>>> https://gist.github.com/wjcapehart/6f49640a075f47b1040c48917ebd631b >>>>>>>> >>>>>>>> Sorry Larry: valgrind is reporting from homebrew that is in >>>>>>>> compatible with MacOS post El Capitan. >>>>>>>> >>>>>>>> Roy: from the client side I’m not seeing any significant redflags in >>>>>>>> the console logs >>>>>>>> >>>>>>>> Really really out of clues at this point. Thanks to everyone or their >>>>>>>> input though. >>>>>>>> >>>>>>>> Bill >>>>>>>> >>>>>>>> >>>>>>>> From: Sean Arms <sarms@xxxxxxxx> >>>>>>>> Date: Tuesday, May 2, 2017 at 17:50 MDT >>>>>>>> To: William Capehart <William.Capehart@xxxxxxxxx> >>>>>>>> Cc: "netcdfgroup@xxxxxxxxxxxxxxxx" <netcdfgroup@xxxxxxxxxxxxxxxx> >>>>>>>> Subject: Re: [netcdfgroup] Using NetCDF with OPeNDAP on MacOS Sierra >>>>>>>> (homebrew- and netCDF-dependant software) >>>>>>>> >>>>>>>> Greetings Bill, >>>>>>>> >>>>>>>> I have a suspicion this has to do with the way curl was built. What >>>>>>>> does >>>>>>>> >>>>>>>> nc-config --libs >>>>>>>> >>>>>>>> give you? >>>>>>>> >>>>>>>> Sean >>>>>>>> >>>>>>>> >>>>>>>>> On Sun, Apr 30, 2017 at 10:42 AM, Capehart, William J >>>>>>>>> <William.Capehart@xxxxxxxxx> wrote: >>>>>>>>> Hi All >>>>>>>>> >>>>>>>>> I have been having a particularly time working with NetCDF with >>>>>>>>> OPeNDAP on my Macs (right now both are on MacOS 10.12.4). I’ve >>>>>>>>> mostly been using homebrew but this also happens with NCL 6.3 and 6.4 >>>>>>>>> as downloaded from Earth System Grid. >>>>>>>>> >>>>>>>>> When testing code using just the NetCDF fortran libraries as well as >>>>>>>>> just using ncdump I get segmentation faults when I try to access >>>>>>>>> http://test.opendap.org/opendap/data/nc/3fnoc.nc >>>>>>>>> >>>>>>>>> Is anyone else having any luck with their MacOS Sierra NetCDF builds >>>>>>>>> and the software that leverages NetCDF? >>>>>>>>> >>>>>>>>> >>>>>>>>> ------------------------------------------------ >>>>>>>>> Bill Capehart <William.Capehart@xxxxxxxxx> >>>>>>>>> Atmospheric and Environmental Sciences Program Coordinator >>>>>>>>> Civil and Environmental Engineering >>>>>>>>> 201 Mineral Industries Building >>>>>>>>> South Dakota School of Mines and Technology >>>>>>>>> 501 East St Joseph Street >>>>>>>>> Rapid City, SD 57701-3995 >>>>>>>>> Ph: +1-605-394-1994 Mobile: +1-605-484-4692 >>>>>>>>> >>>>>>>>> >>>>>>>>> _______________________________________________ >>>>>>>>> NOTE: All exchanges posted to Unidata maintained email lists are >>>>>>>>> recorded in the Unidata inquiry tracking system and made publicly >>>>>>>>> available through the web. Users who post to any of the lists we >>>>>>>>> maintain are reminded to remove any personal information that they >>>>>>>>> do not want to be made public. >>>>>>>>> >>>>>>>>> >>>>>>>>> netcdfgroup mailing list >>>>>>>>> netcdfgroup@xxxxxxxxxxxxxxxx >>>>>>>>> For list information or to unsubscribe, visit: >>>>>>>>> http://www.unidata.ucar.edu/mailing_lists/ >>>>>>>> >>>>>>> >>>>>>> ********************** >>>>>>> "The contents of this message do not reflect any position of the U.S. >>>>>>> Government or NOAA." >>>>>>> ********************** >>>>>>> Roy Mendelssohn >>>>>>> Supervisory Operations Research Analyst >>>>>>> NOAA/NMFS >>>>>>> Environmental Research Division >>>>>>> Southwest Fisheries Science Center >>>>>>> ***Note new street address*** >>>>>>> 110 McAllister Way >>>>>>> Santa Cruz, CA 95060 >>>>>>> Phone: (831)-420-3666 >>>>>>> Fax: (831) 420-3980 >>>>>>> e-mail: Roy.Mendelssohn@xxxxxxxx www: http://www.pfeg.noaa.gov/ >>>>>>> >>>>>>> "Old age and treachery will overcome youth and skill." >>>>>>> "From those who have been given much, much will be expected" >>>>>>> "the arc of the moral universe is long, but it bends toward justice" >>>>>>> -MLK Jr. >>>>>>> >>>>>>> >>>>>>> >>>>>> >>>>>> ********************** >>>>>> "The contents of this message do not reflect any position of the U.S. >>>>>> Government or NOAA." >>>>>> ********************** >>>>>> Roy Mendelssohn >>>>>> Supervisory Operations Research Analyst >>>>>> NOAA/NMFS >>>>>> Environmental Research Division >>>>>> Southwest Fisheries Science Center >>>>>> ***Note new street address*** >>>>>> 110 McAllister Way >>>>>> Santa Cruz, CA 95060 >>>>>> Phone: (831)-420-3666 >>>>>> Fax: (831) 420-3980 >>>>>> e-mail: Roy.Mendelssohn@xxxxxxxx www: http://www.pfeg.noaa.gov/ >>>>>> >>>>>> "Old age and treachery will overcome youth and skill." >>>>>> "From those who have been given much, much will be expected" >>>>>> "the arc of the moral universe is long, but it bends toward justice" >>>>>> -MLK Jr. >>>>>> >>>>> >>>>> ********************** >>>>> "The contents of this message do not reflect any position of the U.S. >>>>> Government or NOAA." >>>>> ********************** >>>>> Roy Mendelssohn >>>>> Supervisory Operations Research Analyst >>>>> NOAA/NMFS >>>>> Environmental Research Division >>>>> Southwest Fisheries Science Center >>>>> ***Note new street address*** >>>>> 110 McAllister Way >>>>> Santa Cruz, CA 95060 >>>>> Phone: (831)-420-3666 >>>>> Fax: (831) 420-3980 >>>>> e-mail: Roy.Mendelssohn@xxxxxxxx www: http://www.pfeg.noaa.gov/ >>>>> >>>>> "Old age and treachery will overcome youth and skill." >>>>> "From those who have been given much, much will be expected" >>>>> "the arc of the moral universe is long, but it bends toward justice" >>>>> -MLK Jr. >>>>> >>>>> >>>>> >>>> ********************** >>>> "The contents of this message do not reflect any position of the U.S. >>>> Government or NOAA." >>>> ********************** >>>> Roy Mendelssohn >>>> Supervisory Operations Research Analyst >>>> NOAA/NMFS >>>> Environmental Research Division >>>> Southwest Fisheries Science Center >>>> ***Note new street address*** >>>> 110 McAllister Way >>>> Santa Cruz, CA 95060 >>>> Phone: (831)-420-3666 >>>> Fax: (831) 420-3980 >>>> e-mail: Roy.Mendelssohn@xxxxxxxx www: http://www.pfeg.noaa.gov/ >>>> "Old age and treachery will overcome youth and skill." >>>> "From those who have been given much, much will be expected" >>>> "the arc of the moral universe is long, but it bends toward justice" -MLK >>>> Jr. >>>> _______________________________________________ >>>> NOTE: All exchanges posted to Unidata maintained email lists are >>>> recorded in the Unidata inquiry tracking system and made publicly >>>> available through the web. Users who post to any of the lists we >>>> maintain are reminded to remove any personal information that they >>>> do not want to be made public. >>>> netcdfgroup mailing list >>>> netcdfgroup@xxxxxxxxxxxxxxxx >>>> For list information or to unsubscribe, visit: >>>> http://www.unidata.ucar.edu/mailing_lists/ >>> >>> _______________________________________________ >>> NOTE: All exchanges posted to Unidata maintained email lists are >>> recorded in the Unidata inquiry tracking system and made publicly >>> available through the web. Users who post to any of the lists we >>> maintain are reminded to remove any personal information that they >>> do not want to be made public. >>> >>> >>> netcdfgroup mailing list >>> netcdfgroup@xxxxxxxxxxxxxxxx >>> For list information or to unsubscribe, visit: >>> http://www.unidata.ucar.edu/mailing_lists/ > > _______________________________________________ > NOTE: All exchanges posted to Unidata maintained email lists are > recorded in the Unidata inquiry tracking system and made publicly > available through the web. Users who post to any of the lists we > maintain are reminded to remove any personal information that they > do not want to be made public. > > > netcdfgroup mailing list > netcdfgroup@xxxxxxxxxxxxxxxx > For list information or to unsubscribe, visit: > http://www.unidata.ucar.edu/mailing_lists/
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