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Dear all,I am a beginner in compiling codes using netcdf and I am stuck with this problem. Even though my code compiles, when I run it the following message shows up:
./mycode: error while loading shared libraries: libnetcdff.so.6: cannot open shared object file: No such file or directory
However, this library is there and it seems that I have linked the libraries correctly as one can see the output of the ldd command (full output see below):
username@location:~/path$ ldd ./mycodelibnetcdff.so.6 => /usr/lib/x86_64-linux-gnu/libnetcdff.so.6 (0x00007fd4356fd000)
I also added in my bashrc file the following command: export LD_LIBRARY_PATH="/usr/lib/x86_64-linux-gnu/" In my makefile I have the following lines: NETCDF_INCLUDE = $(shell /usr/bin/nc-config --fflags) NETCDF_LIB = $(shell /usr/bin/nc-config --flibs) COMPILER = mpif90 COMPILER_LINKS = -L/usr/libCould someone please give me an idea of what to try next? The output of nc-config --all gives:
username@location:~/path$ nc-config --all This netCDF 4.4.1.1 has been built with the following features: --cc -> /usr/bin/cc --cflags -> -I/usr/include -I/usr/include/hdf5/serial--libs -> -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl
--has-c++ -> no --cxx -> --has-c++4 -> no --cxx4 -> --has-fortran-> yes --fc -> gfortran --fflags -> -I/usr/include--flibs -> -L/usr/lib -lnetcdff -fPIE -pie -Wl,-z,relro -Wl,-z,now -lnetcdf -lnetcdf
--has-f90 -> no --has-f03 -> yes --has-dap -> yes --has-nc2 -> yes --has-nc4 -> yes --has-hdf5 -> yes --has-hdf4 -> no --has-logging-> yes --has-pnetcdf-> no --has-szlib -> no --prefix -> /usr --includedir-> /usr/include --libdir -> /usr/lib/x86_64-linux-gnu --version -> netCDF 4.4.1.1 username@location:~/path$ ldd ./mycode linux-vdso.so.1 (0x00007ffcd43f3000)libnetcdff.so.6 => /usr/lib/x86_64-linux-gnu/libnetcdff.so.6 (0x00007fd4356fd000) libnetcdf.so.11 => /usr/lib/x86_64-linux-gnu/libnetcdf.so.11 (0x00007fd43238e000) libcurl-gnutls.so.4 => /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so.4 (0x00007fd43210f000) libmpi_usempif08.so.20 => /usr/lib/x86_64-linux-gnu/libmpi_usempif08.so.20 (0x00007fd431ee0000) libmpi_usempi_ignore_tkr.so.20 => /usr/lib/x86_64-linux-gnu/libmpi_usempi_ignore_tkr.so.20 (0x00007fd431cda000) libmpi_mpifh.so.20 => /usr/lib/x86_64-linux-gnu/libmpi_mpifh.so.20 (0x00007fd431a83000) libmpi.so.20 => /usr/lib/x86_64-linux-gnu/libmpi.so.20 (0x00007fd431790000) libgfortran.so.3 => /usr/lib/x86_64-linux-gnu/libgfortran.so.3 (0x00007fd43146a000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fd431166000)libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007fd430f4f000) libquadmath.so.0 => /usr/lib/x86_64-linux-gnu/libquadmath.so.0 (0x00007fd430d10000) libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007fd430af3000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fd430754000)libhdf5_serial_hl.so.100 => /usr/lib/x86_64-linux-gnu/libhdf5_serial_hl.so.100 (0x00007fd430530000) libhdf5_serial.so.100 => /usr/lib/x86_64-linux-gnu/libhdf5_serial.so.100 (0x00007fd42ffc8000)
libsz.so.2 => /usr/lib/x86_64-linux-gnu/libsz.so.2 (0x00007fd42fdc5000) libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007fd42fbab000) libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fd42f9a7000)libnghttp2.so.14 => /usr/lib/x86_64-linux-gnu/libnghttp2.so.14 (0x00007fd42f781000) libidn2.so.0 => /usr/lib/x86_64-linux-gnu/libidn2.so.0 (0x00007fd42f55f000) librtmp.so.1 => /usr/lib/x86_64-linux-gnu/librtmp.so.1 (0x00007fd42f342000) libssh2.so.1 => /usr/lib/x86_64-linux-gnu/libssh2.so.1 (0x00007fd42f116000) libpsl.so.5 => /usr/lib/x86_64-linux-gnu/libpsl.so.5 (0x00007fd42ef08000) libnettle.so.6 => /usr/lib/x86_64-linux-gnu/libnettle.so.6 (0x00007fd42ecd1000) libgnutls.so.30 => /usr/lib/x86_64-linux-gnu/libgnutls.so.30 (0x00007fd42e938000) libgssapi_krb5.so.2 => /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2 (0x00007fd42e6ed000) libkrb5.so.3 => /usr/lib/x86_64-linux-gnu/libkrb5.so.3 (0x00007fd42e413000) libk5crypto.so.3 => /usr/lib/x86_64-linux-gnu/libk5crypto.so.3 (0x00007fd42e1e0000) libcom_err.so.2 => /lib/x86_64-linux-gnu/libcom_err.so.2 (0x00007fd42dfdc000) liblber-2.4.so.2 => /usr/lib/x86_64-linux-gnu/liblber-2.4.so.2 (0x00007fd42ddcd000) libldap_r-2.4.so.2 => /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2 (0x00007fd42db7c000)
librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007fd42d974000) libutil.so.1 => /lib/x86_64-linux-gnu/libutil.so.1 (0x00007fd42d771000)libhwloc.so.5 => /usr/lib/x86_64-linux-gnu/libhwloc.so.5 (0x00007fd42d535000) libopen-pal.so.20 => /usr/lib/x86_64-linux-gnu/libopen-pal.so.20 (0x00007fd42d283000) libopen-rte.so.20 => /usr/lib/x86_64-linux-gnu/libopen-rte.so.20 (0x00007fd42cff8000)
/lib64/ld-linux-x86-64.so.2 (0x00007fd435d94000)libaec.so.0 => /usr/lib/x86_64-linux-gnu/libaec.so.0 (0x00007fd42cdf0000) libunistring.so.0 => /usr/lib/x86_64-linux-gnu/libunistring.so.0 (0x00007fd42cad9000) libhogweed.so.4 => /usr/lib/x86_64-linux-gnu/libhogweed.so.4 (0x00007fd42c8a4000) libgmp.so.10 => /usr/lib/x86_64-linux-gnu/libgmp.so.10 (0x00007fd42c621000) libgcrypt.so.20 => /lib/x86_64-linux-gnu/libgcrypt.so.20 (0x00007fd42c311000) libp11-kit.so.0 => /usr/lib/x86_64-linux-gnu/libp11-kit.so.0 (0x00007fd42c0ac000)
libidn.so.11 => /lib/x86_64-linux-gnu/libidn.so.11 (0x00007fd42be78000)libtasn1.so.6 => /usr/lib/x86_64-linux-gnu/libtasn1.so.6 (0x00007fd42bc65000) libkrb5support.so.0 => /usr/lib/x86_64-linux-gnu/libkrb5support.so.0 (0x00007fd42ba59000) libkeyutils.so.1 => /lib/x86_64-linux-gnu/libkeyutils.so.1 (0x00007fd42b855000) libresolv.so.2 => /lib/x86_64-linux-gnu/libresolv.so.2 (0x00007fd42b63e000) libsasl2.so.2 => /usr/lib/x86_64-linux-gnu/libsasl2.so.2 (0x00007fd42b423000) libnuma.so.1 => /usr/lib/x86_64-linux-gnu/libnuma.so.1 (0x00007fd42b218000) libltdl.so.7 => /usr/lib/x86_64-linux-gnu/libltdl.so.7 (0x00007fd42b00e000) libgpg-error.so.0 => /lib/x86_64-linux-gnu/libgpg-error.so.0 (0x00007fd42adfa000) libffi.so.6 => /usr/lib/x86_64-linux-gnu/libffi.so.6 (0x00007fd42abf1000)
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