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Here it is: ./configure --prefix=$DIR/netcdf --disable-dap --enable-netcdf4 --disable-shared --enable-hdf4 --with-hdf4=$DIR/hdf4 --with-hdf5=$DIR/hdf5 LDFLAGS="-L$DIR/hdf5/lib -L$DIR/hdf4/lib" CPPFLAGS="-I$DIR/hdf5/include -I$DIR/hdf4/include" On Tue, Sep 28, 2021 at 6:33 PM Ed Hartnett <edwardjameshartnett@xxxxxxxxx> wrote: > The missing functions are from HDF4, and I don't see any HDF4 libraries on > your link line. > > What was your configure command? > > > On Tue, Sep 28, 2021 at 8:00 AM Ronald Opio <opioronald123@xxxxxxxxx> > wrote: > >> Hello colleagues. >> >> I am trying to install netcdf (4.1.3) with netcdf-4 enabled and with hdf4 >> (4.2.9) and hdf5 (1.8.12) but I get this error in the make stage: >> >> /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 >> -L/home/opio/wrf/libraries/hdf/lib -o ncgen3 main.o load.o escapes.o >> getfill.o init.o genlib.o ncgentab.o ../liblib/libnetcdf.la -lhdf5_hl >> -lhdf5 -lm -lz >> libtool: link: gcc -g -O2 -o ncgen3 main.o load.o escapes.o getfill.o >> init.o genlib.o ncgentab.o -L/home/opio/wrf/libraries/hdf/lib >> ../liblib/.libs/libnetcdf.a -L/home/opio/wrf/libraries/grib2/lib >> /home/opio/wrf/libraries/hdf/lib/libhdf5_hl.so >> /home/opio/wrf/libraries/hdf/lib/libhdf5.so -ldl -lm -lz -Wl,-rpath >> -Wl,/home/opio/wrf/libraries/hdf/lib -Wl,-rpath >> -Wl,/home/opio/wrf/libraries/hdf/lib >> /usr/bin/ld: ../liblib/.libs/libnetcdf.a(libnetcdf4_la-nc4file.o): in >> function `nc4_open_hdf4_file': >> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2173: undefined >> reference to `SDstart' >> /usr/bin/ld: >> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2177: undefined >> reference to `SDfileinfo' >> /usr/bin/ld: >> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2197: undefined >> reference to `SDattrinfo' >> /usr/bin/ld: >> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2211: undefined >> reference to `SDreadattr' >> /usr/bin/ld: >> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2231: undefined >> reference to `SDselect' >> /usr/bin/ld: >> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2237: undefined >> reference to `SDgetinfo' >> /usr/bin/ld: >> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2256: undefined >> reference to `SDgetfillvalue' >> /usr/bin/ld: >> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2333: undefined >> reference to `SDattrinfo' >> /usr/bin/ld: >> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2347: undefined >> reference to `SDreadattr' >> /usr/bin/ld: >> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2279: undefined >> reference to `SDgetdimid' >> /usr/bin/ld: >> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2281: undefined >> reference to `SDdiminfo' >> /usr/bin/ld: ../liblib/.libs/libnetcdf.a(libnetcdf4_la-nc4file.o): in >> function `close_netcdf4_file': >> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4file.c:2702: undefined >> reference to `SDend' >> /usr/bin/ld: ../liblib/.libs/libnetcdf.a(libnetcdf4_la-nc4var.o): in >> function `nc4_get_hdf4_vara': >> /home/opio/wrf/libraries/netcdf-4.1.3/libsrc4/nc4var.c:1358: undefined >> reference to `SDreaddata' >> collect2: error: ld returned 1 exit status >> make[2]: *** [Makefile:370: ncgen3] Error 1 >> make[2]: Leaving directory '/home/opio/wrf/libraries/netcdf-4.1.3/ncgen3' >> make[1]: *** [Makefile:551: all-recursive] Error 1 >> make[1]: Leaving directory '/home/opio/wrf/libraries/netcdf-4.1.3' >> make: *** [Makefile:422: all] Error 2 >> >> >> I have read all existing solutions but none has worked for my case yet. I >> kindly request help to solve it. >> >> >> Ronald. >> _______________________________________________ >> NOTE: All exchanges posted to Unidata maintained email lists are >> recorded in the Unidata inquiry tracking system and made publicly >> available through the web. Users who post to any of the lists we >> maintain are reminded to remove any personal information that they >> do not want to be made public. >> >> >> netcdfgroup mailing list >> netcdfgroup@xxxxxxxxxxxxxxxx >> For list information or to unsubscribe, visit: >> https://www.unidata.ucar.edu/mailing_lists/ >> >
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