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Hello,
I am trying to install netcdf4 package on Ubuntu 14.04 using the
following command
pip3 install netcdf4. This did install successfully but when I try to
execute a script which had import netCDF4 I get the following error -
My python is compiled with icc and not gcc !
Traceback (most recent call last):
File "display.py", line 5, in <module>
from netCDF4 import Dataset # http://code.google.com/p/netcdf4-python/
File "/usr/local/lib/python3.4/dist-packages/netCDF4/__init__.py",
line 3, in <module> from ._netCDF4 import *
File "netCDF4/_netCDF4.pyx", line 942, in init netCDF4._netCDF4
(netCDF4/_netCDF4.c:76006)
File "/usr/local/lib/python3.4/dist-packages/netcdftime/__init__.py",
line 1, in <module>
from .netcdftime import utime, JulianDayFromDate, DateFromJulianDay
File "/usr/local/lib/python3.4/dist-packages/netcdftime/netcdftime.py",
line 14, in <module>
from ._datetime import datetime
ImportError:
/usr/local/lib/python3.4/dist-packages/netcdftime/_datetime.cpython-34m.so:
undefined symbol: __intel_sse2_strchr
So it looks like this has a dependency on cython and hdf5.
So I did install cython and that did install successfully.
When I do a pip3 install h5py I get the following errors -
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip_build_root/h5py/setup.py", line 149, in <module>
cmdclass = CMDCLASS,
File "/usr/lib/python3.4/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.4/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/usr/lib/python3/dist-packages/setuptools/command/install.py", line
53, in run
return _install.run(self)
File "/usr/lib/python3.4/distutils/command/install.py", line 583, in run
self.run_command('build')
File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/usr/lib/python3.4/distutils/command/build.py", line 126, in run
self.run_command(cmd_name)
File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip_build_root/h5py/setup_build.py", line 147, in run
from Cython.Build import cythonize
File "/usr/local/lib/python3.4/dist-packages/Cython/Build/__init__.py",
line 1, in <module>
from .Dependencies import cythonize
File "/usr/local/lib/python3.4/dist-packages/Cython/Build/Dependencies.py",
line 50, in <module>
from ..Compiler.Main import Context, CompilationOptions, default_options
File "/usr/local/lib/python3.4/dist-packages/Cython/Compiler/Main.py",
line 28, in <module>
from .Scanning import PyrexScanner, FileSourceDescriptor
ImportError: /usr/local/lib/python3.4/dist-packages/Cython/Compiler/
Scanning.cpython-34m.so <http://scanning.cpython-34m.so/>: undefined
symbol: __intel_sse2_strchr
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