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[thredds] HDF5 Aggregation

Hi,
If I want to serve aggregated HDF5 files, do I have to specify the coordinate system (grid) with NcML, or is there a way to construct the HDF5 file so THREDDS can get the coordSys directly from the HDF5 file? I ask because if my only option is NcML I will ask my "data source" to create NetCDF files instead since the coverage area is 1222 x 1183 points and they are not equal spaced. 

Thanks,
Dave
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