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Re: [thredds] directories only

Hi,

 

Did comment out the sections that showed as errors in the cataloginit.log and 
restarted tomcat.

Same results and then remembered selinux is in enforcing mode.

Turned it off and bingo all files show.

 

Good old selinux strikes me again.

 

Mark

 

From: thredds-bounces@xxxxxxxxxxxxxxxx <thredds-bounces@xxxxxxxxxxxxxxxx> On 
Behalf Of Maciolek, Mark
Sent: Tuesday, July 24, 2018 11:50 AM
To: 'Antonio S. Cofino' <cofinoa@xxxxxxxxx>
Cc: 'THREDDS community' <thredds@xxxxxxxxxxxxxxxx>
Subject: Re: [thredds] directories only

 

Hi,

 

Thank you, forgot about those logs. Two data directories from a different 
system are gone. Will have to ask the researcher if I can comment them out or 
get the data restored.

 

scanLocation=/net/nfs/wilma/data3/odac/model/mm5/analysis>: CrawlableDataset 
for scanLocation does not exist.

... Dropping this datasetScan [mm5/analysis].

added rootPath=<wrf/analysis>  for directory= 
</net/nfs/wilma/data3/odac/model/wrf/analysis>

*** ERROR Invalid InvDatasetScan <path=wrf/48hr_forecast; 
scanLocation=/net/nfs/wilma/data3/odac/model/wrf/48hr_forecast>

 

Mark

 

--Mark Maciolek

Network Administrator

Morse Hall Rm 338

http://www.unh.edu/research/support-units/research-computing-center

 

From: Antonio S. Cofino <cofinoa@xxxxxxxxx <mailto:cofinoa@xxxxxxxxx> > 
Sent: Tuesday, July 24, 2018 11:42 AM
To: Maciolek, Mark <Mark.Maciolek@xxxxxxx <mailto:Mark.Maciolek@xxxxxxx> >
Cc: THREDDS community <thredds@xxxxxxxxxxxxxxxx 
<mailto:thredds@xxxxxxxxxxxxxxxx> >
Subject: Re: [thredds] directories only

 

Caution - External Email 

  _____  

Mark, 

 

Check for any error in catalogInit.log at $TDS_CONTENT/thredds/logs

 

A.

 

 

On Tue, 24 Jul 2018, 16:22 Maciolek, Mark, <Mark.Maciolek@xxxxxxx 
<mailto:Mark.Maciolek@xxxxxxx> > wrote:

Hi,

opal_catalog.xml not changed since Oct. 2016

http://tds-opal.sr.unh.edu/thredds/catalog/opal_ts/altimeter/wav_files/jason1/c257/catalog.html

no longer showing any of the files in the catalog.html 

I can do a ls of the directory and see all the files are there.

System was updated to CentOS 7.5 last week and rebooted. Updated to TDS-4.6.11 
today.
Tomcat logs don't show reason why this is happening.

Files are mounted vis nfs but that has been the case since the system was 
originally setup.

Any suggestions on troubleshooting this issue?

Current opal_catalog.xml


<?xml version="1.0" encoding="UTF-8"?>
<catalog name="OPAL CO2 Bouy"
  xmlns="http://www.unidata.ucar.edu/namespaces/thredds/InvCatalog/v1.0 
<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.unidata.ucar.edu_namespaces_thredds_InvCatalog_v1.0&d=DwMGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=QUwWzv5SV_wpnzBhWIelF4sl0dvYrJSwkpE3s0K2d-w&m=RzrEBG7JTCTlYK0yYV0Sx2YSXdj96PADq2KETneE6F8&s=CwSENV9l-ZOHmQm-oazm5JtWuqWQrdd93xPiZVttluI&e=>
 "
  xmlns:xlink="http://www.w3.org/1999/xlink 
<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.w3.org_1999_xlink&d=DwMGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=QUwWzv5SV_wpnzBhWIelF4sl0dvYrJSwkpE3s0K2d-w&m=RzrEBG7JTCTlYK0yYV0Sx2YSXdj96PADq2KETneE6F8&s=3dInTVnm7yF0OhQUtHG2M0xB5u0ZbmTZ3vwhDj8cIFM&e=>
 " version="1.0.2">

        <service name="allServices" base="" serviceType="compound">
          <service name="dapService" serviceType="OpenDAP" 
base="/thredds/dodsC/"/>
         <service name="wcs" serviceType="WCS" base="/thredds/wcs/"/>
                 <service name="ncss" serviceType="NetcdfSubset" 
base="/thredds/ncss/grid/"/>
                <service name="http" serviceType="HTTPServer" 
base="/thredds/fileServer/" />
          <service name="uddc" serviceType="UDDC" base="/thredds/uddc/"/>
          <service name="iso" serviceType="ISO" base="/thredds/iso/"/>
          <service name="sos" serviceType="SOS" base="/thredds/sos/"/>

                     </service>



  <dataset name="OPAL Time Series Data">
    <metadata inherited="true">
      <serviceName>allServices</serviceName>
      <dataType>Grid</dataType>
      <dataFormat>NetCDF</dataFormat>
    </metadata>
<!--    <dataset name="opal_ts/WBD" ID="opal_ts/WBD" urlPath="opal_ts/WBD">
         <netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2 
<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.unidata.ucar.edu_namespaces_netcdf_ncml-2D2.2&d=DwMGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=QUwWzv5SV_wpnzBhWIelF4sl0dvYrJSwkpE3s0K2d-w&m=RzrEBG7JTCTlYK0yYV0Sx2YSXdj96PADq2KETneE6F8&s=beirJShdNz9LBwrPmHmc5zMtxrVKJ9Msux3R5_nTXgg&e=>
 ">
        scan location="/net/nfs/porter/raid1/data/COOA/opal_ts/WBD" 
dateFormatMark="WBD_#yyyy"
                  regExp=".*WBD\_[0-9]{4}\.nc$" suffix=".nc" subdirs="false" />

      </netcdf>
    </dataset>
    -->
<datasetScan name="opal_ts/WBD" ID="opal_ts/WBD" path="opal_ts/WBD"
      location="/net/nfs/porter/raid1/data/COOA/opal_ts/WBD">
            <metadata inherited="true">
                    <documentation type="summary"> UNH Appledore Island CO2 
Buoy</documentation>
                          </metadata>
                                <filter>
                                        <include wildcard="*.nc"/>
                                              </filter>
                                                    <addDatasetSize/>
                                                        </datasetScan>

<datasetScan name="opal_ts/CML" ID="opal_ts/CML" path="opal_ts/CML"
      location="/net/nfs/porter/raid1/data/COOA/opal_ts/CML">
            <metadata inherited="true">
                    <documentation type="summary"> UNH Coastal Marine 
Laboratory</documentation>
                          </metadata>
                                <filter>
                                        <include wildcard="*.nc"/>
                                              </filter>
                                                    <addDatasetSize/>
                                                        </datasetScan>


<datasetScan name="opal_ts/opal_asflux" ID="opal_ts/opal_asflux" 
path="opal_ts/opal_asflux"
      location="/net/nfs/porter/raid1/data/COOA/opal_ts/opal_asflux">
            <metadata inherited="true">
                    <documentation type="summary"> Jeffrey's Ledge Air-Sea Flux 
Buoy</documentation>
                          </metadata>
                                <filter>
                                        <include wildcard="*.nc"/>
                                              </filter>
                                                    <addDatasetSize/>
                                                        </datasetScan>

<datasetScan name="opal_ts/altimeter/wav_files/jason1" 
ID="opal_ts/altimeter/wav_files/jason1" 
path="opal_ts/altimeter/wav_files/jason1"
      
location="/net/nfs/porter/raid1/data/COOA/opal_ts/altimeter/wav_files/jason1">
            <metadata inherited="true">
                    <documentation type="summary"> Altimeter Matched with 
WaveWatch 3</documentation>
                          </metadata>
                                <filter>
                                        <include wildcard="*.nc"/>
                                              </filter>
                                                    <addDatasetSize/>
                                                        </datasetScan>


<datasetScan name="opal_ts/altimeter/wav_files/jason2" 
ID="opal_ts/altimeter/wav_files/jason2" 
path="opal_ts/altimeter/wav_files/jason2"
      
location="/net/nfs/porter/raid1/data/COOA/opal_ts/altimeter/wav_files/jason2">
            <metadata inherited="true">
                    <documentation type="summary"> Altimeter Matched with 
WaveWatch 3</documentation>
                          </metadata>
                                <filter>
                                        <include wildcard="*.nc"/>
                                              </filter>
                                                    <addDatasetSize/>
                                                        </datasetScan>

<datasetScan name="opal_ts/altimeter/wav_files/topex" 
ID="opal_ts/altimeter/wav_files/topex" path="opal_ts/altimeter/wav_files/topex"
      
location="/net/nfs/porter/raid1/data/COOA/opal_ts/altimeter/wav_files/topex">
            <metadata inherited="true">
                    <documentation type="summary"> Altimeter Matched with 
WaveWatch 3-TOPEX</documentation>
                          </metadata>
                                <filter>
                                        <include wildcard="*.nc"/>
                                              </filter>
                                                    <addDatasetSize/>
                                                        </datasetScan>

<datasetScan name="opal_ts/altimeter/wav_files/jason3" 
ID="opal_ts/altimeter/wav_files/jason3" 
path="opal_ts/altimeter/wav_files/jason3"
      
location="/net/nfs/porter/raid1/data/COOA/opal_ts/altimeter/wav_files/jason3">
            <metadata inherited="true">
                    <documentation type="summary"> Altimeter Matched with 
WaveWatch 3-JASON3</documentation>
                          </metadata>
                                <filter>
                                        <include wildcard="*.nc"/>
                                              </filter>
                                                    <addDatasetSize/>
                                                        </datasetScan>



  </dataset>
</catalog>


--Mark Maciolek
Network Administrator
Morse Hall Rm 338
http://www.unh.edu/research/support-units/research-computing-center

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