Hi:
I have been trying for the longest time to compile the hdf5 library with the
--enable-parallel option so that I can then compile netCDF with HDF on my
MacBook Pro using Lion (10.7.4). I have been in touch with the hdf-forum
mailing list but I have not gotten any response. I assume that some of you must
have gone through the same steps to install hdf5 parallel. May be one of you
can help me figure out what I am doing wrong?
Here are my settings:
FC=mpif90
CC=mpicc
sudo ./configure --prefix=/usr/local/hdf5-1.8.9-gfortran --enable-parallel
--enable-fortran --with-zlib=/usr/local/zlib-1.2.7-gfortran/
I have tested my mpich2 implementation and know that to works. I am getting the
following error message:
checking for API tracing... no
checking for instrumented library... no
checking whether to clear file buffers... yes
checking whether a memory checking tool will be used... no
checking for parallel support files... provided by compiler
checking for MPI_Init in -lmpi... no
checking for MPI_Init in -lmpich... no
checking for
include 'mpif.h'
integer:: ierr
call mpi_file_open( ierr ) in -lmpi... ./configure: line 27480:
${ac_cv_lib_mpi_ ____________include__mpif_h_ ____________integer___ierr
____________call_mpi_file_open__ierr__+:}: bad substitution
./configure: line 27496: ac_cv_lib_mpi_: command not found
./configure: line 27497: ____________include__mpif_h_: command not found
./configure: line 27498: ____________integer___ierr: command not found
./configure: line 27502: ____________include__mpif_h_: command not found
yes
checking prefix for running on one processor...
checking prefix for running in parallel...
checking whether a simple MPI-IO program can be linked... no
configure: error: unable to link a simple MPI-IO application
I checked my mpi implementation. The subroutine mpi_file_open is in mpio.h and
not in mpif.h. So I am not sure why configure points to mpif.h and not mpio.h.
I do not know how to proceed from there from folks on the netcdf side. Any
suggestion?
Thanks,
Laura
!=====================================================
! Laura D. Fowler
! e-mail: ldfowler58@xxxxxx
! Phone: 970-215-0516
!=====================================================
