Laura,
I was going to reply you on the hdf-forum list, but saw your mail here.
Could you please send me config.log file (in the top directory). Information
you provide is not enough.
Thank you!
Elena
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Elena Pourmal The HDF Group http://hdfgroup.org
1800 So. Oak St., Suite 203, Champaign IL 61820
217.531.6112
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
On Sep 6, 2012, at 4:47 PM, ldfowler wrote:
> Hi:
> I have been trying for the longest time to compile the hdf5 library with the
> --enable-parallel option so that I can then compile netCDF with HDF on my
> MacBook Pro using Lion (10.7.4). I have been in touch with the hdf-forum
> mailing list but I have not gotten any response. I assume that some of you
> must have gone through the same steps to install hdf5 parallel. May be one of
> you can help me figure out what I am doing wrong?
>
> Here are my settings:
> FC=mpif90
> CC=mpicc
> sudo ./configure --prefix=/usr/local/hdf5-1.8.9-gfortran --enable-parallel
> --enable-fortran --with-zlib=/usr/local/zlib-1.2.7-gfortran/
>
> I have tested my mpich2 implementation and know that to works. I am getting
> the following error message:
>
> checking for API tracing... no
> checking for instrumented library... no
> checking whether to clear file buffers... yes
> checking whether a memory checking tool will be used... no
> checking for parallel support files... provided by compiler
> checking for MPI_Init in -lmpi... no
> checking for MPI_Init in -lmpich... no
> checking for
> include 'mpif.h'
> integer:: ierr
> call mpi_file_open( ierr ) in -lmpi... ./configure: line 27480:
> ${ac_cv_lib_mpi_ ____________include__mpif_h_ ____________integer___ierr
> ____________call_mpi_file_open__ierr__+:}: bad substitution
> ./configure: line 27496: ac_cv_lib_mpi_: command not found
> ./configure: line 27497: ____________include__mpif_h_: command not found
> ./configure: line 27498: ____________integer___ierr: command not found
> ./configure: line 27502: ____________include__mpif_h_: command not found
> yes
> checking prefix for running on one processor...
> checking prefix for running in parallel...
> checking whether a simple MPI-IO program can be linked... no
> configure: error: unable to link a simple MPI-IO application
>
> I checked my mpi implementation. The subroutine mpi_file_open is in mpio.h
> and not in mpif.h. So I am not sure why configure points to mpif.h and not
> mpio.h. I do not know how to proceed from there from folks on the netcdf
> side. Any suggestion?
>
> Thanks,
> Laura
>
> !=====================================================
> ! Laura D. Fowler
> ! e-mail: ldfowler58@xxxxxx
> ! Phone: 970-215-0516
> !=====================================================
>
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