Re: [netcdfgroup] problems with compilation: H5DS routines undefined

• To: Robert Latham <robl@xxxxxxxxxxx>
• Subject: Re: [netcdfgroup] problems with compilation: H5DS routines undefined
• From: Ed Hartnett <ed@xxxxxxxxxxxxxxxx>
• Date: Sun, 29 Jun 2008 18:47:51 -0600

Robert Latham <robl@xxxxxxxxxxx> writes:

> On Sun, Jun 29, 2008 at 04:20:55PM +0100, Momme Butenschön wrote:
>> When compiling a program linking with netcdf4, hdf5 I get the following 
>> error:
>> 
>> ifort -r8 -O2 -o ../../../bin/opa model.o ../../../lib/oce/libopa.a  
>> .../../../lib/libioipsl.a -L/opt/netCDF-4/lib -lnetcdff -lnetcdf 
>> -L/opt/hdf5/lib -lhdf5 
>> /opt/netCDF-4/lib/libnetcdf.so: undefined reference to `H5DSget_num_scales'
>> /opt/netCDF-4/lib/libnetcdf.so: undefined reference to `H5DSset_scale'
>> /opt/netCDF-4/lib/libnetcdf.so: undefined reference to `H5DSis_scale'
>> /opt/netCDF-4/lib/libnetcdf.so: undefined reference to `H5DSiterate_scales'
>> /opt/netCDF-4/lib/libnetcdf.so: undefined reference to `H5DSget_scale_name'
>> /opt/netCDF-4/lib/libnetcdf.so: undefined reference to `H5DSattach_scale'
>> /opt/netCDF-4/lib/libnetcdf.so: undefined reference to `H5DSdetach_scale'
>> gmake[1]: *** [../../../bin/opa] Error 1
>> 
>> 
>> nm of libnetcdf.a and libnetcdf.so gives
>> 
>>          U H5DSget_num_scales
>> 
>> Any ideas what's going wrong?
>
> You need one more library: "libhdf5_hl" contains the "high level hdf5"
> routines.  
>
> ==rob
>
> -- 
> Rob Latham
> Mathematics and Computer Science Division    A215 0178 EA2D B059 8CDF
> Argonne National Lab, IL USA                 B29D F333 664A 4280 315B

That's correct, of course. See:

http://www.unidata.ucar.edu/software/netcdf/docs/netcdf-install/Using.html

Thanks,

Ed

-- 
Ed Hartnett  -- ed@xxxxxxxxxxxxxxxx

• References:
  • [netcdfgroup] problems with compilation: H5DS routines undefined
    • From: Momme Butenschön
  • Re: [netcdfgroup] problems with compilation: H5DS routines undefined
    • From: Robert Latham