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Re: [netcdfgroup] Difficulties building ncks-4.0.1 and cdo-1.4.4 against netCDF-4.1.1

  • To: dpierce@xxxxxxxx
  • Subject: Re: [netcdfgroup] Difficulties building ncks-4.0.1 and cdo-1.4.4 against netCDF-4.1.1
  • From: Jennifer Adams <jma@xxxxxxxxxxxxx>
  • Date: Mon, 24 May 2010 14:39:10 -0400
Here are the environment variables I had to set, the configure command I used, and one additional change to the nco config.h file to get it to compile on CentOS 64bit (gcc 4.1.2). I should add that some of these commands are tailored to the way I built hdf5 and netcdf4. It seems so kludgey, but it worked. I haven't tried with nco-4.0.1. 

setenv CPPFLAGS -I/path_to_netcdf-4.1.1/include
setenv NETCDF4_ROOT /path_to_netcdf-4.1.1
setenv HDF5_LIB_DIR /path_to_hdf5-1.8.4-patch1
setenv LIBS "-L/path_to_netcdf-4.1.1-rc2/lib -lnetcdf \
-L/path_to_hdf5-1.8.4-patch1/lib -lhdf5_hl -lhdf5 \
-L/path_to_zlib/lib -lz -lm \
/path_to_szip-2.1/lib/libsz.a \
/path_to_curl-7.19.6/lib/libcurl.a \
-lrt -lz"
./configure --prefix=/path_to_nco-4.0.0 --enable-netcdf4 --disable- shared --enable-static 

Also added:
#define HAVE_NETCDF4_H 1
to config.h

I hope this helps!
--Jennifer



On May 24, 2010, at 2:22 PM, David Pierce wrote:


Hi Gary,
I ran into the multiple definitions problem as well. Not wanting to spend time messing with it, I simply commented out the redundant definitions in 
the nco source code (the make error messages show the file and line
numbers) and that worked.   This is on a Ubundu 8.04 LTS x64 system.

Regards,

--Dave


Gary Strand wrote:


I'm having significant problems getting nco-4.0.1 and cdo-1.4.4 to
build against netCDF-4.1.1/hdf5-1.8.4patch1 on a reasonably generic
Linux 64-bit system.

'nco' reports many multiple definitions during 'make'; 'cdo' fails on
'configure' because it can't find 'nc_open'.

Does anyone have any hints/suggestions as to get past these problems?

Thanks!

Gary Strand
strandwg@xxxxxxxx



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David W. Pierce
Division of Climate, Atmospheric Science, and Physical Oceanography
Scripps Institution of Oceanography
(858) 534-8276 (voice)  /  (858) 534-8561 (fax)    dpierce@xxxxxxxx
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--
Jennifer M. Adams
IGES/COLA
4041 Powder Mill Road, Suite 302
Calverton, MD 20705
jma@xxxxxxxxxxxxx
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