Re: [netcdfgroup] Difficulties building ncks-4.0.1 and cdo-1.4.4 against netCDF-4.1.1

• To: "Jennifer Adams" <jma@xxxxxxxxxxxxx>, <netcdfgroup@xxxxxxxxxxxxxxxx>
• Subject: Re: [netcdfgroup] Difficulties building ncks-4.0.1 and cdo-1.4.4 against netCDF-4.1.1
• From: "Mark Hadfield" <m.hadfield@xxxxxxxxxx>
• Date: Tue, 25 May 2010 07:57:28 +1200

Mark Hadfield          "Kei puwaha te tai nei, Hoea tahi tatou"
m.hadfield@xxxxxxxxxx
NIWA
 
>>> On 2010-05-25 at 06:39, Jennifer Adams <jma@xxxxxxxxxxxxx> wrote:

Here are the environment variables I had to set, the configure command I used, 
and one additional change to the nco config.h file to get it to compile on 
CentOS 64bit (gcc 4.1.2). I should add that some of these commands are tailored 
to the way I built hdf5 and netcdf4. It seems so kludgey, but it worked. I 
haven't tried with nco-4.0.1. 

setenv CPPFLAGS -I/path_to_netcdf-4.1.1/include
setenv NETCDF4_ROOT /path_to_netcdf-4.1.1
setenv HDF5_LIB_DIR /path_to_hdf5-1.8.4-patch1 
setenv LIBS "-L/path_to_netcdf-4.1.1-rc2/lib -lnetcdf \
-L/path_to_hdf5-1.8.4-patch1/lib -lhdf5_hl -lhdf5 \
-L/path_to_zlib/lib -lz -lm \
/path_to_szip-2.1/lib/libsz.a \
/path_to_curl-7.19.6/lib/libcurl.a \
-lrt -lz"

./configure --prefix=/path_to_nco-4.0.0 --enable-netcdf4 --disable-shared 
--enable-static

Also added:
#define HAVE_NETCDF4_H 1
to config.h

I hope this helps! 
--Jennifer



 
As of version 4.0.1, netCDF has the nc-config command to make the finding of 
libraries a bit less tedious. So to set the LIBS variable you could write (as 
Bash code)


export LIBS=$(nc-config --libs)
or maybe you might need


export LIBS=$(path_to_netcdf-4.1.1/bin/nc-config --libs)

 
 

NIWA is the trading name of the National Institute of Water & Atmospheric 
Research Ltd.

• References:
  • [netcdfgroup] Difficulties building ncks-4.0.1 and cdo-1.4.4 against netCDF-4.1.1
    • From: Gary Strand
  • Re: [netcdfgroup] Difficulties building ncks-4.0.1 and cdo-1.4.4 against netCDF-4.1.1
    • From: David Pierce
  • Re: [netcdfgroup] Difficulties building ncks-4.0.1 and cdo-1.4.4 against netCDF-4.1.1
    • From: Jennifer Adams