[netcdfgroup] Is a failed test or not?

To: "netcdfgroup@xxxxxxxxxxxxxxxx" <netcdfgroup@xxxxxxxxxxxxxxxx>
Subject: [netcdfgroup] Is a failed test or not?
From: Marston Sheldon Johnston <marston@xxxxxxxxxxx>
Date: Sat, 29 May 2010 14:26:08 +0200
Hi,


I ran make check om my Linux cluster (Redhat) with the following configuration:

./configure --prefix=/home/sm_marst/SOFTWARE --enable-separate-fortran 
--disable-shared --with-hdf5=/home/sm_marst/SOFTWARE --with-udunits 
--with-zlib=/usr/lib64 --enable-netcdf-4 --enable-docs-install 
--enable-extra-example-tests --enable-extra-tests CC=icc 
--enable-large-file-tests --with-temp-large=/nobackup/rossby14/sm_marst/tmp 
FC=ifort F77=ifort CXX=icpc 

and I got the error below. What is strange is that the test says passed at the 
end. Is this what it's suppose to do?

Thanks,
/Marston


*** Testing HDF5/NetCDF-4 interoperability...
*** Creating a HDF5 file with one var with two dimension scales...ok.
*** Checking that HDF5 file can be read by netCDF-4, and adding an att...ok .
*** Checking that one var, two dimscales, one att file can still be read by 
HDF5...ok.
*** Creating a HDF5 file with one var and no dimension scales...ok.
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
  #000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
    major: Symbol table
    minor: Object not found
  #001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
    major: Symbol table
    minor: Object not found
  #002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
    major: Symbol table
    minor: Object not found
  #005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index 
to query
    major: Symbol table
    minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
  #000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
    major: Symbol table
    minor: Object not found
  #001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
    major: Symbol table
    minor: Object not found
  #002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
    major: Symbol table
    minor: Object not found
  #005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index 
to query
    major: Symbol table
    minor: Bad value
*** Creating a HDF5 file with one var and no dimension scales, without creation 
ordering...ok.
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
  #000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
    major: Symbol table
    minor: Object not found
  #001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
    major: Symbol table
    minor: Object not found
  #002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
    major: Symbol table
    minor: Object not found
  #005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index 
to query
    major: Symbol table
    minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
  #000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
    major: Symbol table
    minor: Object not found
  #001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
    major: Symbol table
    minor: Object not found
  #002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
    major: Symbol table
    minor: Object not found
  #005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index 
to query
    major: Symbol table
    minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
  #000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
    major: Symbol table
    minor: Object not found
  #001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
    major: Symbol table
    minor: Object not found
  #002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
    major: Symbol table
    minor: Object not found
  #005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index 
to query
    major: Symbol table
    minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
  #000: H5O.c line 676 in H5Oget_info_by_idx(): group not found
    major: Symbol table
    minor: Object not found
  #001: H5Gloc.c line 578 in H5G_loc_find_by_idx(): can't find object
    major: Symbol table
    minor: Object not found
  #002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #003: H5Gtraverse.c line 801 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: H5Gloc.c line 509 in H5G_loc_find_by_idx_cb(): link not found
    major: Symbol table
    minor: Object not found
  #005: H5Gobj.c line 1108 in H5G_obj_lookup_by_idx(): no creation order index 
to query
    major: Symbol table
    minor: Bad value
*** Creating a HDF5 file with two vars and no dimension scales, without 
creation ordering...ok.
*** Creating a HDF5 file with fixed length string...ok.
*** Checking a HDF5 file with scalar, fixed-length string dataset...ok.
*** Tests successful!
PASS: tst_interops

- 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
~ Marston S. Johnston                                   e-mail: 
marston@xxxxxxxxxxx  ~
~ Doctoral Student                                      Radio and Space Science 
        ~       
~ Chalmers Technical University                 http://www.chalmers.se          
    ~
~ Gothenburg                                                    Tel. (46) 31 
772 2235                 ~     
~ Sweden                                                        Skype ID 
marston.johnston       ~       
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Follow-Ups:
- Re: [netcdfgroup] Is a failed test or not?
  - From: Dennis Heimbigner
2010 messages navigation, sorted by:
1. Thread
2. Subject
3. Author
4. Date
5. ↑ Table Of Contents
Search the netcdfgroup archives: