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The config.log shows an error about unresolved references to the SZIP lib (where it checks for H5Fflush), so --with-szip=[path] needs to be added to the configure line. (Or recompile hdf5 without szip.)
-- Ted On Aug 1, 2010, at 9:01 PM, John Helly wrote:
Greetings.I am struggling to compile netcdf-4.1.1 on OSX 10.6.4 with hdf5 and fortran so I can build Dave Pierce's new ncview. I have worked my way through some earlier problems and have come to this script:#!/bin/bash make distclean #export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx32-static" export CC=/usr/bin/cc export CFLAGS='-m32' #export CPPFLAGS=-Df2cFortran export F77=gfortran export FC=gfortran export FCFLAGS=-qsuffix=cpp=f90./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 -- enable-f90 --with-hdf5=/usr/local/hdf5-1.8.5-macosx32-static# #export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx64-static"#./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 -- enable-f90 --with-hdf5=/usr/local/hdf5-1.8.5-macosx64-staticThis got me past some earlier problems with 32-bit fortran libraries (I think) but now I'm getting complaints about the hdf5 libraries even though they seem to be found for some things.checking for manual-page index command... checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking whether we should try to build netCDF-4... yes checking for H5Fflush in -lhdf5... noconfigure: error: Can't find or link to the hdf5 library. Configure with --disable-netcdf-4 or see config.log for errors.I'm attaching the config.log for those who might care to look. In the script above, you can see that I experimented with defining the LDFLAGS and this solved the problem of the missing -lhdf5 but introduced a bunch of other even stranger problems that made me think I was overriding some more basic library paths by specifying LDFLAGS. Anyway, I couldn't figure out what those problems were so I backed up to this in hoping that someone out there would have a suggestion.Any help would be appreciated. Cheers. --------------John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 760 840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) / /www.sdsc.edu/~hellyj<config.log>_______________________________________________ netcdfgroup mailing list netcdfgroup@xxxxxxxxxxxxxxxx For list information or to unsubscribe, visit: http://www.unidata.ucar.edu/mailing_lists/
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