Re: [netcdfgroup] Compilation error for netcdf-c-4.9.0

• To: Sourish Basu <Sourish.Basu@xxxxxxxxxxxx>, netCDF Mail List <netcdfgroup@xxxxxxxxxxxxxxxx>
• Subject: Re: [netcdfgroup] Compilation error for netcdf-c-4.9.0
• From: Dennis Heimbigner <dmh@xxxxxxxx>
• Date: Tue, 27 Sep 2022 13:43:55 -0600

Note that libz is not the same as libzip.

On 9/27/2022 1:34 PM, Sourish Basu wrote:

Configure “worked” in the sense it found libz (I think):

# Features
--------
NetCDF-2 API:yes
HDF4 Support:no
HDF5 Support:yes
NetCDF-4 API:yes
NC-4 Parallel Support:no
PnetCDF Support:no
DAP2 Support:yes
DAP4 Support:yes
Byte-Range Support:no
Diskless Support:yes
MMap Support:no
JNA Support:no
CDF5 Support:yes
ERANGE Fill Support:no
Relaxed Boundary Check:yes
Parallel Filters:   yes
NCZarr Support:yes
Multi-Filter Support:yes
Quantization:yes
Logging: no
SZIP Write Support:   yes
Standard Filters:   deflate bz2 szip
ZSTD Support:   no
Benchmarks:no

However, ‘make’ fails with the following:

zmap_zip.c: At top level:
zmap_zip.c:742:8: error: unknown type name 'zip_error_t'
 ziperr(zip_error_t* zerror)
        ^
make[2]: *** [libnczarr_la-zmap_zip.lo] Error 1

make[2]: Leaving directory `/local/home/sbasu/packages/src/netcdf-c-4.9.0/libnczarr'

make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/local/home/sbasu/packages/src/netcdf-c-4.9.0'
make: *** [all] Error 2

So I’m not sure how I would ignore it. Are you suggesting that I proceed with ‘make install’ even though ‘make’ fails?

-Sourish

On 27 Sep, 2022, at 3:07 PM, Dennis Heimbigner <dmh@xxxxxxxx> wrote:

It is possible/probable that
> undefined reference to `zip_open’

is caused by configure trying to test
for the library.  If the configure completes
and make check works, then you probably can
ignore that error.

On 9/27/2022 9:01 AM, Sourish Basu wrote:

Hello all,

I’m trying to compile netcdf 4.9.0 on a linux machine, and it fails with several errors from zmap_zip.c. Error log attached. I’ve compiled netcdf on many platforms, but this error is new to me. I’ve checked that I have the zlib headers in /usr/include, and zlib-devel is installed. However, config.log does have an error message

undefined reference to `zip_open’

Not sure if that’s important, because then later in that same file it says

configure:8113: checking whether libzip library is available
configure:8115: result: yes

So not sure what to make of it.

Thanks for any help,

Sourish

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    • From: Sourish Basu
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    • From: Dennis Heimbigner
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    • From: Sourish Basu