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Hi Kate and Gerry, Thanks you two. I've changed my .bashrc file and log out/in and tried again . I can finish configuration by: ./configure --prefix=.... But when I "make", I got problem again: [h3dang@bro98 netcdf-3.6.2test]$ make cd . && /bin/sh /brosto2/jcl_data/hdang/M3HOME/netcdf-3.6.2test/missing --run automake-1.9 --foreign man/Makefile.am:155: user target `netcdf.html' defined here... /usr/share/automake-1.9/am/texibuild.am: ... overrides Automake target `netcdf.html' defined here man/Makefile.am:159: user target `netcdf-install.html' defined here... /usr/share/automake-1.9/am/texibuild.am: ... overrides Automake target `netcdf-install.html' defined here man/Makefile.am:163: user target `netcdf-c.html' defined here... /usr/share/automake-1.9/am/texibuild.am: ... overrides Automake target `netcdf-c.html' defined here man/Makefile.am:179: user target `netcdf-tutorial.html' defined here... /usr/share/automake-1.9/am/texibuild.am: ... overrides Automake target `netcdf-tutorial.html' defined here man/Makefile.am:167: user target `netcdf-f77.html' defined here... /usr/share/automake-1.9/am/texibuild.am: ... overrides Automake target `netcdf-f77.html' defined here man/Makefile.am:175: user target `netcdf-f90.html' defined here... /usr/share/automake-1.9/am/texibuild.am: ... overrides Automake target `netcdf-f90.html' defined here man/Makefile.am:171: user target `netcdf-cxx.html' defined here... /usr/share/automake-1.9/am/texibuild.am: ... overrides Automake target `netcdf-cxx.html' defined here man/Makefile.am:61: user variable `TEXI2DVI' defined here... /usr/share/automake-1.9/am/texinfos.am: ... overrides Automake variable `TEXI2DVI' defined here man/Makefile.am:73: `doc_DATA' is used but `docdir' is undefined make: *** [Makefile.in] Error 1 So far, the only way to make it successful is to add these flags and arguments together with ./configurate. ./configurate alone seems not to read the setting in ".bashrc".... Hongyan On Thu, May 27, 2010 at 5:25 PM, Gerald Creager <gerry.creager@xxxxxxxx>wrote: > Kate, > > Great catch. I just found that, about a minute ago and was looking again > for Hongyan's message to respond. You're right, that will tend to cause > some problems. > > gerry > > Kate Hedstrom wrote: > >> Dear Hongyan, >> >> Your error appears to be due to the "-02" flag in FFLAGS. That is a >> zero-two rather than an oh-two. >> >> Kate >> >> On 05/27/2010 12:43 PM, H.Dang wrote: >> >>> Hi Gerald, >>> >>> Thanks for your kindness. I've attached the "config.log". The way I >>> compile was to set the environment in .bashrc, and ./configure --prefix=.... >>> My .bashrc is like: >>> >>> 20 export CC=pgcc >>> 21 export CFLAGS="-O2 -Msignextend -V" >>> 22 export F77=pgfortran >>> 23 export FC=pgfortran >>> 24 export F90=pgfortran >>> 25 export FFLAGS="-02 -w -V" 26 export CXX=pgcpp >>> #c++(intel icpc's default) >>> 27 export CPPFLAGS="-DNDEBUG -DpgiFortran" >>> I couldn't make it through this way. But I just success if I compile like >>> this: >>> >>> env CC=pgcc CFLAGS="-O2 -Msignextend -V" FC=pgfortran F90=pgfortran >>> FFLAGS="-O2 -w -V" \ >>> CXX=pgcpp CPPFLAGS="-DNDEBUG -DpgiFortran" ./configure -prefix=/..... >>> >>> (from http://www.pgroup.com/resources/netcdf/netcdf362_pgi90.htm). < >>> http://www.pgroup.com/resources/netcdf/netcdf362_pgi90.htm%29.>.. >>> >>> >>> Please let me know if you find the trick in it. Thanks! >>> >>> Cheers >>> Hongyan >>> On Thu, May 27, 2010 at 3:58 PM, Gerald Creager >>> <gerry.creager@xxxxxxxx<mailto: >>> gerry.creager@xxxxxxxx>> wrote: >>> >>> Send your config.log and let me look at it. I've spent a lot of >>> time with netcdf lately. >>> >>> H.Dang wrote: >>> >>> Hi dear all, >>> >>> I'm still compiling netcdf-3.6.2 (./configure --prefix=... ) >>> since the error message I got is like: >>> >>> checking for /usr/bin/nm... /usr/bin/nm -B >>> checking nm flags... >>> checking for C-equivalent to Fortran routine "SUB"... >>> pgf90 9.0-4 64-bit target on x86-64 Linux -tp nehalem-64 >>> Copyright 1989-2000, The Portland Group, Inc. All Rights >>> Reserved. >>> Copyright 2000-2009, STMicroelectronics, Inc. All Rights >>> Reserved. >>> configure: error: Could not compile conftest.f >>> >>> I tried to find "conftest.f" this way in directory netcdf-3.6.2: >>> >>> find . -name conftest.f >>> >>> But I can't find it. Would you please tell me where could be >>> the right place this file stay? Thank you! >>> -- Cordially, >>> Hongyan >>> 鸿雁 >>> >>> >>> >>> ------------------------------------------------------------------------ >>> >>> _______________________________________________ >>> netcdfgroup mailing list >>> netcdfgroup@xxxxxxxxxxxxxxxx <mailto:netcdfgroup@xxxxxxxxxxxxxxxx >>> > >>> >>> For list information or to unsubscribe, visit: >>> http://www.unidata.ucar.edu/mailing_lists/ >>> >>> >>> -- Gerry Creager -- gerry.creager@xxxxxxxx >>> <mailto:gerry.creager@xxxxxxxx> >>> >>> Texas Mesonet -- AATLT, Texas A&M University >>> Cell: 979.229.5301 Office: 979.458.4020 FAX: 979.862.3983 >>> Office: 1700 Research Parkway Ste 160, TAMU, College Station, TX 77843 >>> >>> >>> >>> >>> -- >>> Cordially, >>> Hongyan >>> 鸿雁 >>> >>> >>> _______________________________________________ >>> netcdfgroup mailing list >>> netcdfgroup@xxxxxxxxxxxxxxxx >>> For list information or to unsubscribe, visit: >>> http://www.unidata.ucar.edu/mailing_lists/ >>> >> >> >> -- >> Kate Hedström Arctic Region Supercomputing Center >> kate@xxxxxxxx University of Alaska, Fairbanks >> Phone: 907-450-8678 >> >> >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> netcdfgroup mailing list >> netcdfgroup@xxxxxxxxxxxxxxxx >> For list information or to unsubscribe, visit: >> http://www.unidata.ucar.edu/mailing_lists/ >> > > -- > Gerry Creager -- gerry.creager@xxxxxxxx > Texas Mesonet -- AATLT, Texas A&M University > Cell: 979.229.5301 Office: 979.458.4020 FAX: 979.862.3983 > Office: 1700 Research Parkway Ste 160, TAMU, College Station, TX 77843 > > _______________________________________________ > netcdfgroup mailing list > netcdfgroup@xxxxxxxxxxxxxxxx > For list information or to unsubscribe, visit: > http://www.unidata.ucar.edu/mailing_lists/ > -- Cordially, Hongyan 鸿雁
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