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gerry H.Dang wrote:
Hi Kate and Gerry,Thanks you two. I've changed my .bashrc file and log out/in and tried again. I can finish configuration by:./configure --prefix=.... But when I "make", I got problem again: [h3dang@bro98 netcdf-3.6.2test]$ makecd . && /bin/sh /brosto2/jcl_data/hdang/M3HOME/netcdf-3.6.2test/missing --run automake-1.9 --foreignman/Makefile.am:155: user target `netcdf.html' defined here.../usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf.html' defined hereman/Makefile.am:159: user target `netcdf-install.html' defined here.../usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf-install.html' defined hereman/Makefile.am:163: user target `netcdf-c.html' defined here.../usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf-c.html' defined hereman/Makefile.am:179: user target `netcdf-tutorial.html' defined here.../usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf-tutorial.html' defined hereman/Makefile.am:167: user target `netcdf-f77.html' defined here.../usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf-f77.html' defined hereman/Makefile.am:175: user target `netcdf-f90.html' defined here.../usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf-f90.html' defined hereman/Makefile.am:171: user target `netcdf-cxx.html' defined here.../usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf-cxx.html' defined hereman/Makefile.am:61: user variable `TEXI2DVI' defined here.../usr/share/automake-1.9/am/texinfos.am <http://texinfos.am>: ... overrides Automake variable `TEXI2DVI' defined hereman/Makefile.am:73: `doc_DATA' is used but `docdir' is undefined make: *** [Makefile.in] Error 1So far, the only way to make it successful is to add these flags and arguments together with ./configurate../configurate alone seems not to read the setting in ".bashrc".... HongyanOn Thu, May 27, 2010 at 5:25 PM, Gerald Creager <gerry.creager@xxxxxxxx <mailto:gerry.creager@xxxxxxxx>> wrote:Kate, Great catch. I just found that, about a minute ago and was looking again for Hongyan's message to respond. You're right, that will tend to cause some problems. gerry Kate Hedstrom wrote: Dear Hongyan, Your error appears to be due to the "-02" flag in FFLAGS. That is a zero-two rather than an oh-two. Kate On 05/27/2010 12:43 PM, H.Dang wrote: Hi Gerald, Thanks for your kindness. I've attached the "config.log". The way I compile was to set the environment in .bashrc, and ./configure --prefix=.... My .bashrc is like: 20 export CC=pgcc 21 export CFLAGS="-O2 -Msignextend -V" 22 export F77=pgfortran 23 export FC=pgfortran 24 export F90=pgfortran 25 export FFLAGS="-02 -w -V" 26 export CXX=pgcpp #c++(intel icpc's default) 27 export CPPFLAGS="-DNDEBUG -DpgiFortran" I couldn't make it through this way. But I just success if I compile like this: env CC=pgcc CFLAGS="-O2 -Msignextend -V" FC=pgfortran F90=pgfortran FFLAGS="-O2 -w -V" \ CXX=pgcpp CPPFLAGS="-DNDEBUG -DpgiFortran" ./configure -prefix=/..... (from http://www.pgroup.com/resources/netcdf/netcdf362_pgi90.htm). <http://www.pgroup.com/resources/netcdf/netcdf362_pgi90.htm%29.>.. Please let me know if you find the trick in it. Thanks! Cheers Hongyan On Thu, May 27, 2010 at 3:58 PM, Gerald Creager <gerry.creager@xxxxxxxx <mailto:gerry.creager@xxxxxxxx> <mailto:gerry.creager@xxxxxxxx <mailto:gerry.creager@xxxxxxxx>>> wrote: Send your config.log and let me look at it. I've spent a lot of time with netcdf lately. H.Dang wrote: Hi dear all, I'm still compiling netcdf-3.6.2 (./configure --prefix=... ) since the error message I got is like: checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... pgf90 9.0-4 64-bit target on x86-64 Linux -tp nehalem-64 Copyright 1989-2000, The Portland Group, Inc. All Rights Reserved. Copyright 2000-2009, STMicroelectronics, Inc. All Rights Reserved. configure: error: Could not compile conftest.f I tried to find "conftest.f" this way in directory netcdf-3.6.2: find . -name conftest.f But I can't find it. Would you please tell me where could be the right place this file stay? Thank you! -- Cordially, Hongyan 鸿雁------------------------------------------------------------------------_______________________________________________ netcdfgroup mailing list netcdfgroup@xxxxxxxxxxxxxxxx <mailto:netcdfgroup@xxxxxxxxxxxxxxxx> <mailto:netcdfgroup@xxxxxxxxxxxxxxxx <mailto:netcdfgroup@xxxxxxxxxxxxxxxx>> For list information or to unsubscribe, visit: http://www.unidata.ucar.edu/mailing_lists/ -- Gerry Creager -- gerry.creager@xxxxxxxx <mailto:gerry.creager@xxxxxxxx> <mailto:gerry.creager@xxxxxxxx <mailto:gerry.creager@xxxxxxxx>> Texas Mesonet -- AATLT, Texas A&M University Cell: 979.229.5301 Office: 979.458.4020 FAX: 979.862.3983 Office: 1700 Research Parkway Ste 160, TAMU, College Station, TX 77843-- Cordially,Hongyan 鸿雁 _______________________________________________ netcdfgroup mailing list netcdfgroup@xxxxxxxxxxxxxxxx <mailto:netcdfgroup@xxxxxxxxxxxxxxxx> For list information or to unsubscribe, visit: http://www.unidata.ucar.edu/mailing_lists/-- Kate Hedström Arctic Region Supercomputing Centerkate@xxxxxxxx <mailto:kate@xxxxxxxx> University of Alaska, Fairbanks Phone: 907-450-8678 ------------------------------------------------------------------------ _______________________________________________ netcdfgroup mailing list netcdfgroup@xxxxxxxxxxxxxxxx <mailto:netcdfgroup@xxxxxxxxxxxxxxxx> For list information or to unsubscribe, visit: http://www.unidata.ucar.edu/mailing_lists/-- Gerry Creager -- gerry.creager@xxxxxxxx <mailto:gerry.creager@xxxxxxxx>Texas Mesonet -- AATLT, Texas A&M University Cell: 979.229.5301 Office: 979.458.4020 FAX: 979.862.3983 Office: 1700 Research Parkway Ste 160, TAMU, College Station, TX 77843 _______________________________________________ netcdfgroup mailing list netcdfgroup@xxxxxxxxxxxxxxxx <mailto:netcdfgroup@xxxxxxxxxxxxxxxx> For list information or to unsubscribe, visit:http://www.unidata.ucar.edu/mailing_lists/-- Cordially, Hongyan 鸿雁
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