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Re: [netcdfgroup] conftest.f

capture your environment ('env > ENV.capture') and send it along. I suspect you've a typo in there somewhere. 

gerry

H.Dang wrote:

Hi Kate and Gerry,
Thanks you two. I've changed my .bashrc file and log out/in and tried again. I can finish configuration by: 

./configure --prefix=....

But when I "make", I got problem again:

[h3dang@bro98 netcdf-3.6.2test]$ make
cd . && /bin/sh /brosto2/jcl_data/hdang/M3HOME/netcdf-3.6.2test/missing --run automake-1.9 --foreign 
man/Makefile.am:155: user target `netcdf.html' defined here...
/usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf.html' defined here 
man/Makefile.am:159: user target `netcdf-install.html' defined here...
/usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf-install.html' defined here 
man/Makefile.am:163: user target `netcdf-c.html' defined here...
/usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf-c.html' defined here 
man/Makefile.am:179: user target `netcdf-tutorial.html' defined here...
/usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf-tutorial.html' defined here 
man/Makefile.am:167: user target `netcdf-f77.html' defined here...
/usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf-f77.html' defined here 
man/Makefile.am:175: user target `netcdf-f90.html' defined here...
/usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf-f90.html' defined here 
man/Makefile.am:171: user target `netcdf-cxx.html' defined here...
/usr/share/automake-1.9/am/texibuild.am <http://texibuild.am>: ... overrides Automake target `netcdf-cxx.html' defined here 
man/Makefile.am:61: user variable `TEXI2DVI' defined here...
/usr/share/automake-1.9/am/texinfos.am <http://texinfos.am>: ... overrides Automake variable `TEXI2DVI' defined here 
man/Makefile.am:73: `doc_DATA' is used but `docdir' is undefined
make: *** [Makefile.in] Error 1
So far, the only way to make it successful is to add these flags and arguments together with ./configurate. 

./configurate alone seems not to read the setting in ".bashrc"....

Hongyan
On Thu, May 27, 2010 at 5:25 PM, Gerald Creager <gerry.creager@xxxxxxxx <mailto:gerry.creager@xxxxxxxx>> wrote: 

    Kate,

    Great catch. I just found that, about a minute ago and was looking
    again for Hongyan's message to respond.  You're right, that will
    tend to cause some problems.

    gerry

    Kate Hedstrom wrote:

        Dear Hongyan,

        Your error appears to be due to the "-02" flag in FFLAGS. That
        is a zero-two rather than an oh-two.

        Kate

        On 05/27/2010 12:43 PM, H.Dang wrote:

            Hi Gerald,

            Thanks for your kindness. I've attached the "config.log".
            The way I compile was to set the environment in .bashrc, and
            ./configure --prefix=.... My .bashrc is like:

             20  export CC=pgcc
             21  export CFLAGS="-O2 -Msignextend -V"
             22  export F77=pgfortran
             23  export FC=pgfortran
             24  export F90=pgfortran
             25  export FFLAGS="-02 -w -V"                   26  export
            CXX=pgcpp #c++(intel icpc's default)
             27  export CPPFLAGS="-DNDEBUG -DpgiFortran"
            I couldn't make it through this way. But I just success if I
            compile like this:

            env CC=pgcc CFLAGS="-O2 -Msignextend -V" FC=pgfortran
            F90=pgfortran FFLAGS="-O2 -w -V"  \
            CXX=pgcpp CPPFLAGS="-DNDEBUG -DpgiFortran" ./configure
            -prefix=/.....

            (from
            http://www.pgroup.com/resources/netcdf/netcdf362_pgi90.htm).
            <http://www.pgroup.com/resources/netcdf/netcdf362_pgi90.htm%29.>..


            Please let me know if you find the trick in it. Thanks!

            Cheers
            Hongyan
            On Thu, May 27, 2010 at 3:58 PM, Gerald Creager
            <gerry.creager@xxxxxxxx <mailto:gerry.creager@xxxxxxxx>
            <mailto:gerry.creager@xxxxxxxx
            <mailto:gerry.creager@xxxxxxxx>>> wrote:

               Send your config.log and let me look at it. I've spent a
            lot of
               time with netcdf lately.

               H.Dang wrote:

                   Hi dear all,

                   I'm still compiling netcdf-3.6.2 (./configure
            --prefix=... )
                   since the error message I got is like:

                   checking for /usr/bin/nm... /usr/bin/nm -B
                   checking nm flags...
                   checking for C-equivalent to Fortran routine "SUB"...
                   pgf90 9.0-4 64-bit target on x86-64 Linux -tp nehalem-64
                   Copyright 1989-2000, The Portland Group, Inc.  All Rights
                   Reserved.
                   Copyright 2000-2009, STMicroelectronics, Inc.  All Rights
                   Reserved.
                   configure: error: Could not compile conftest.f

                   I tried to find "conftest.f" this way in directory
            netcdf-3.6.2:

                   find . -name conftest.f

                   But I can't find it. Would you please tell me where
            could be
                   the right place this file stay? Thank you!
                   --         Cordially,
                   Hongyan
                   鸿雁
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               --     Gerry Creager -- gerry.creager@xxxxxxxx
            <mailto:gerry.creager@xxxxxxxx>
               <mailto:gerry.creager@xxxxxxxx
            <mailto:gerry.creager@xxxxxxxx>>

               Texas Mesonet -- AATLT, Texas A&M University
               Cell: 979.229.5301 Office: 979.458.4020 FAX: 979.862.3983
               Office: 1700 Research Parkway Ste 160, TAMU, College
            Station, TX 77843
-- Cordially, 
            Hongyan
            鸿雁


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-- Kate Hedström Arctic Region Supercomputing Center 
        kate@xxxxxxxx <mailto:kate@xxxxxxxx>       University of Alaska,
        Fairbanks
        Phone: 907-450-8678


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-- Gerry Creager -- gerry.creager@xxxxxxxx <mailto:gerry.creager@xxxxxxxx> 
    Texas Mesonet -- AATLT, Texas A&M University
    Cell: 979.229.5301 Office: 979.458.4020 FAX: 979.862.3983
    Office: 1700 Research Parkway Ste 160, TAMU, College Station, TX 77843

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--
Cordially,
Hongyan
鸿雁