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NOTICE: This version of the NSF Unidata web site (archive.unidata.ucar.edu) is no longer being updated.
Current content can be found at unidata.ucar.edu.
To learn about what's going on, see About the Archive Site.
Cheers.
--------------
John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of
Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 760
840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) /
/www.sdsc.edu/~hellyj
On Aug 1, 2010, at 7:04 PM, John Helly wrote:
Same result with the beta as well.
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking whether we should try to build netCDF-4... yes
checking for H5Fflush in -lhdf5... no
configure: error: Can't find or link to the hdf5 library. Configure with
--disable-netcdf-4 or see config.log for errors.
NeptuneStonesteps.local:~/src/netcdf-4.1.2-beta1>
Cheers.
--------------
John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of
Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 760
840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) /
/www.sdsc.edu/~hellyj
On Aug 1, 2010, at 7:01 PM, John Helly wrote:
Greetings.
I am struggling to compile netcdf-4.1.1 on OSX 10.6.4 with hdf5 and fortran so
I can build Dave Pierce's new ncview. I have worked my way through some
earlier problems and have come to this script:
#!/bin/bash
make distclean
#export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx32-static"
export CC=/usr/bin/cc
export CFLAGS='-m32'
#export CPPFLAGS=-Df2cFortran
export F77=gfortran
export FC=gfortran
export FCFLAGS=-qsuffix=cpp=f90
./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 --enable-f90
--with-hdf5=/usr/local/hdf5-1.8.5-macosx32-static
#
#export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx64-static"
#./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 --enable-f90
--with-hdf5=/usr/local/hdf5-1.8.5-macosx64-static
This got me past some earlier problems with 32-bit fortran libraries (I think)
but now I'm getting complaints about the hdf5 libraries even though they seem
to be found for some things.
checking for manual-page index command...
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking whether we should try to build netCDF-4... yes
checking for H5Fflush in -lhdf5... no
configure: error: Can't find or link to the hdf5 library. Configure with
--disable-netcdf-4 or see config.log for errors.
I'm attaching the config.log for those who might care to look. In the script
above, you can see that I experimented with defining the LDFLAGS and this
solved the problem of the missing -lhdf5 but introduced a bunch of other even
stranger problems that made me think I was overriding some more basic library
paths by specifying LDFLAGS. Anyway, I couldn't figure out what those problems
were so I backed up to this in hoping that someone out there would have a
suggestion.
Any help would be appreciated.
Cheers.
--------------
John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of
Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 760
840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) /
/www.sdsc.edu/~hellyj
<config.log>
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