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Hi John, Looks like you are finding the hdf5 include files but not the library file. >From your logs look in /usr/local/hdf5-1.8.5-macosx64-static/lib for the file libhdf5.a or libhdf5.so one of these should be present, if not there is your problem. If so try linking to it with a small test program. On Sun, Aug 1, 2010 at 8:09 PM, John Helly <hellyj@xxxxxxxx> wrote: > > Cheers. > -------------- > John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of > Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 > 760 840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) / / > www.sdsc.edu/~hellyj <http://www.sdsc.edu/%7Ehellyj> > > > > > On Aug 1, 2010, at 7:04 PM, John Helly wrote: > > Same result with the beta as well. > > checking hdf5.h presence... yes > checking for hdf5.h... yes > checking whether we should try to build netCDF-4... yes > checking for H5Fflush in -lhdf5... no > configure: error: Can't find or link to the hdf5 library. Configure with > --disable-netcdf-4 or see config.log for errors. > NeptuneStonesteps.local:~/src/netcdf-4.1.2-beta1> > > > Cheers. > -------------- > John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of > Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 > 760 840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) / / > www.sdsc.edu/~hellyj <http://www.sdsc.edu/%7Ehellyj> > > > > > On Aug 1, 2010, at 7:01 PM, John Helly wrote: > > Greetings. > > I am struggling to compile netcdf-4.1.1 on OSX 10.6.4 with hdf5 and fortran > so I can build Dave Pierce's new ncview. I have worked my way through some > earlier problems and have come to this script: > > #!/bin/bash > make distclean > #export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx32-static" > export CC=/usr/bin/cc > export CFLAGS='-m32' > #export CPPFLAGS=-Df2cFortran > export F77=gfortran > export FC=gfortran > export FCFLAGS=-qsuffix=cpp=f90 > ./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 --enable-f90 > --with-hdf5=/usr/local/hdf5-1.8.5-macosx32-static > # > #export LDFLAGS="-L/usr/local/hdf5-1.8.5-macosx64-static" > #./configure --prefix=/usr/local/netcdf-4.1.1 --enable-netcdf-4 > --enable-f90 --with-hdf5=/usr/local/hdf5-1.8.5-macosx64-static > > > This got me past some earlier problems with 32-bit fortran libraries (I > think) but now I'm getting complaints about the hdf5 libraries even though > they seem to be found for some things. > > checking for manual-page index command... > checking hdf5.h usability... yes > checking hdf5.h presence... yes > checking for hdf5.h... yes > checking whether we should try to build netCDF-4... yes > checking for H5Fflush in -lhdf5... no > configure: error: Can't find or link to the hdf5 library. Configure with > --disable-netcdf-4 or see config.log for errors. > > > I'm attaching the config.log for those who might care to look. In the > script above, you can see that I experimented with defining the LDFLAGS and > this solved the problem of the missing -lhdf5 but introduced a bunch of > other even stranger problems that made me think I was overriding some more > basic library paths by specifying LDFLAGS. Anyway, I couldn't figure out > what those problems were so I backed up to this in hoping that someone out > there would have a suggestion. > > Any help would be appreciated. > > Cheers. > -------------- > John Helly, UCSD / San Diego Supercomputer Center / Scripps Institution of > Oceanography, Climate, Atmospheric Science, and Physical Oceanography / +01 > 760 840 8660 mobile / stonesteps (Skype) / stonesteps7 (iChat) / / > www.sdsc.edu/~hellyj <http://www.sdsc.edu/%7Ehellyj> > <config.log> > > > _______________________________________________ > netcdfgroup mailing list > netcdfgroup@xxxxxxxxxxxxxxxx > For list information or to unsubscribe, visit: > http://www.unidata.ucar.edu/mailing_lists/ >
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