Re: [netcdfgroup] HD5 library error

• To: Nick Papior <nickpapior@xxxxxxxxx>
• Subject: Re: [netcdfgroup] HD5 library error
• From: Mahmood Naderan <mahmood.nt@xxxxxxxxx>
• Date: Thu, 21 Jul 2016 18:52:05 +0430

Dominikus,
I tried your suggestion, but still see the same error.

root@cluster:netcdf-4.4.1#
LD_LIBRARY_PATH=/export/apps/computer/hdf5-1.8.17-linux-centos6-x86_64-gcc447-shared/lib:$LD_LIBRARY_PATH
root@cluster:netcdf-4.4.1# echo $LD_LIBRARY_PATH
/export/apps/computer/hdf5-1.8.17-linux-centos6-x86_64-gcc447-shared/lib:/opt/gridengine/lib/linux-x64:/opt/openmpi/lib
root@cluster:netcdf-4.4.1# LIBS="-lhdf5 -lhdf5_hl -lsz -lz"
root@cluster:netcdf-4.4.1# ./configure
...
...
checking for library containing H5Fflush... no
configure: error: Can't find or link to the hdf5 library. Use
--disable-netcdf-4, or see config.log for errors.



Nick,
I tried what you said in another session, but got the same error!


root@cluster:netcdf-4.4.1#
LDFLAGS="-L/export/apps/computer/hdf5-1.8.17-linux-centos6-x86_64-gcc447-shared/lib
$LDFLAGS"
root@cluster:netcdf-4.4.1# ./configure
...
...
checking for library containing H5Fflush... no
configure: error: Can't find or link to the hdf5 library. Use
--disable-netcdf-4, or see config.log for errors.




In config.log, I see

configure:17820: gcc -o conftest    conftest.c -lhdf5dll  -ldl -lm -lcurl
>&5
/usr/bin/ld: cannot find -lhdf5dll
collect2: ld returned 1 exit status

That is correct because there is no such file

root@cluster:netcdf-4.4.1# find
../hdf5-1.8.17-linux-centos6-x86_64-gcc447-shared/lib/ -name *dll*
root@cluster:netcdf-4.4.1#




Any idea about that?

Regards,
Mahmood

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  • [netcdfgroup] HD5 library error
    • From: Mahmood Naderan
  • Re: [netcdfgroup] HD5 library error
    • From: Nick Papior
  • Re: [netcdfgroup] HD5 library error
    • From: Mahmood Naderan
  • Re: [netcdfgroup] HD5 library error
    • From: Nick Papior